Browse Element(s) Details


Os.307.1.S2_at

Description gb:AK063298.1
DB_XREF= gi:32973316
TID=Os.307.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.307 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-113-E12, full insert sequence.
FL= gb:AK108417.1 gb:AK063298.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1484011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g14790Os.49444.1.S1_at11/111+8266390..8269429expressed protein
LOC_Os01g14790Os.38074.1.S1_s_at11/111+8266390..8269429expressed protein
LOC_Os01g14790Os.49444.1.S1_s_at11/111+8266390..8269429expressed protein
LOC_Os01g14790Os.38074.1.S1_x_at10/111+8266390..8269429expressed protein
LOC_Os01g14790Os.38074.1.S1_at7/111+8266390..8269429expressed protein
LOC_Os01g14790OsAffx.20033.1.S1_at1/111+8266390..8269429expressed protein
LOC_Os01g14800OsAffx.22232.1.S1_at7/111+8270288..8270743hypothetical protein
LOC_Os01g14810Os.14625.1.S1_at11/111+8272276..82807615' nucleotidase family protein, putative, expressed
LOC_Os01g14820Os.33563.1.A1_at11/111+8281271..8285922expressed protein
LOC_Os01g14820Os.43805.1.S1_x_at11/111+8281271..8285922expressed protein
LOC_Os01g14820Os.43805.1.S1_at11/111+8281271..8285922expressed protein
LOC_Os01g14830Os.9946.1.S1_at11/111+8288164..829295950S ribosomal protein L3-2, chloroplast precursor, putative, expressed
LOC_Os01g14840Os.307.1.S2_at11/111+8294417..8299203expressed protein
LOC_Os01g14840Os.307.1.S1_at11/111+8294417..8299203expressed protein
LOC_Os01g14850Os.9962.1.S1_s_at11/111+8302510..8303347expressed protein
LOC_Os01g14850Os.45916.1.S1_x_at11/111+8302510..8303347expressed protein
LOC_Os01g14850Os.45916.1.S1_s_at9/111+8302510..8303347expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.307.1.S2_at--340--1311Chr01:8298725..8298749 (25 bp)
AGATGGATCTTCTCAGGGTCTGCCT
LOC_Os01g14840
Os.307.1.S2_at--740--3471Chr01:8298738..8298762 (25 bp)
CAGGGTCTGCCTTTGAAGGGTGCTT
LOC_Os01g14840
Os.307.1.S2_at--467--1211Chr01:8298833..8298857 (25 bp)
AGTTAGTTAGACCTGCCATTTGAGC
LOC_Os01g14840
Os.307.1.S2_at--369--5871Chr01:8298854..8298878 (25 bp)
GAGCCGCTACGAAATGTCAAGGTTT
LOC_Os01g14840
Os.307.1.S2_at--620--10831Chr01:8298877..8298901 (25 bp)
TTGTGTCTATCTGGTGTGTGTCTGA
LOC_Os01g14840
Os.307.1.S2_at--361--7151Chr01:8298968..8298992 (25 bp)
GTCTATCATGTGTGGTGCGTTTGCA
LOC_Os01g14840
Os.307.1.S2_at--369--9551Chr01:8299015..8299039 (25 bp)
TCTATTTTTTGTGTGGTGCGTGCGT
LOC_Os01g14840
Os.307.1.S2_at--168--10491Chr01:8299057..8299081 (25 bp)
TTGAGACTAGAACGGTCCACACCAT
LOC_Os01g14840
Os.307.1.S2_at--489--6071Chr01:8299093..8299117 (25 bp)
GAGTTTTGCAACTTCACATGAGTGA
LOC_Os01g14840
Os.307.1.S2_at--771--10831Chr01:8299120..8299144 (25 bp)
TTGGGCTATAGACGGTTCTGTTGCT
LOC_Os01g14840
Os.307.1.S2_at--650--6671Chr01:8299139..8299163 (25 bp)
GTTGCTGTCAACTCAAAACTCCTTT
LOC_Os01g14840
Target Sequence 
AGATGGATCTTCTCAGGGTCTGCCTTTGAAGGGTGCTTGGCAAAGCCGTGGGGGCCAGAGACTCTTCATGAGCAAAGCAA
AGAAGTGACGAATTGGTTTTGCAGNGTCAAGTTAGTTAGACCTGCCATTTGAGCCGCTACGAAATGTCAAGGTTTGTGTC
TATCTGGTGTGTGTCTGATAGTTGAGTACATGAGTGCAGCAATCATGTGTGATGCGTTTGCATTTTGATTTTTTTTTCTT
TTTTGTCTATCATGTGTGGTGCGTTTGCATTTTGATTTTTTTTTCTTTTTGTCTATTTTTTGTGTGGTGCGTGCGTTTGG
TAGACCATGGAACTTGAGACTAGAACGGTCCACACCATACTGCATAGTGGAGTTTTGCAACTTCACATGAGTGAATTTGG
GCTATAGACGGTTCTGTTGCTGTCAACTCAAAACTCCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.307.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis