Browse Element(s) Details


Os.38074.1.S1_x_at

Description gb:CF328719
DB_XREF= gi:33805676
DB_XREF=NACL--03-M02.g1
CLONE=NACL--03-M02
TID=Os.38074.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.38074 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1479010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g14760OsAffx.23249.1.S1_at11/111+8244542..8245306hypothetical protein
LOC_Os01g14770OsAffx.22233.5.S1_x_at11/111+8256318..8258315expressed protein
LOC_Os01g14780NANA1+8264713..8266071hypothetical protein
LOC_Os01g14790Os.49444.1.S1_at11/111+8266390..8269429expressed protein
LOC_Os01g14790Os.38074.1.S1_s_at11/111+8266390..8269429expressed protein
LOC_Os01g14790Os.49444.1.S1_s_at11/111+8266390..8269429expressed protein
LOC_Os01g14790Os.38074.1.S1_x_at10/111+8266390..8269429expressed protein
LOC_Os01g14790Os.38074.1.S1_at7/111+8266390..8269429expressed protein
LOC_Os01g14790OsAffx.20033.1.S1_at1/111+8266390..8269429expressed protein
LOC_Os01g14800OsAffx.22232.1.S1_at7/111+8270288..8270743hypothetical protein
LOC_Os01g14810Os.14625.1.S1_at11/111+8272276..82807615' nucleotidase family protein, putative, expressed
LOC_Os01g14820Os.33563.1.A1_at11/111+8281271..8285922expressed protein
LOC_Os01g14820Os.43805.1.S1_x_at11/111+8281271..8285922expressed protein
LOC_Os01g14820Os.43805.1.S1_at11/111+8281271..8285922expressed protein
LOC_Os01g14830Os.9946.1.S1_at11/111+8288164..829295950S ribosomal protein L3-2, chloroplast precursor, putative, expressed
LOC_Os01g14840Os.307.1.S2_at11/111+8294417..8299203expressed protein
LOC_Os01g14840Os.307.1.S1_at11/111+8294417..8299203expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38074.1.S1_x_at--2--4472Chr04:20771526..20771549 (24 bp)
GCCTCGCCGAGTAGTTCTGATTCGA
NONE
Os.38074.1.S1_x_at--554--9391NONE
TCGATTGCCAGAGACTGTCGATACT
NONE
Os.38074.1.S1_x_at--704--5971Chr01:8268421..8268444 (24 bp)
GAGACTGTCGATACTGAAATTCCAA
LOC_Os01g14790
Os.38074.1.S1_x_at--308--1331Chr01:8268461..8268820 (25 bp)
AGAGTTAGGTTTTCTTACTGCTGGC
LOC_Os01g14790
Os.38074.1.S1_x_at--1048--10471Chr01:8268812..8268834 (23 bp)
TTACTGCTGGCGTCTTCTCTGTTGG
LOC_Os01g14790
Os.38074.1.S1_x_at--494--4431Chr01:8268864..8268989 (25 bp)
GCCTTCACTACGGTCCAAGAATAAC
LOC_Os01g14790
Os.38074.1.S1_x_at--978--2911Chr01:8268996..8269020 (25 bp)
AAGGAGTCTCAGGTGGGCATCATGC
LOC_Os01g14790
Os.38074.1.S1_x_at--1094--8271Chr01:8269011..8269035 (25 bp)
GGCATCATGCGGAGCAATCTCTGTG
LOC_Os01g14790
Os.38074.1.S1_x_at--720--9651Chr01:8269039..8269063 (25 bp)
TCAGCATCGGCATTGCTCGTGCGAC
LOC_Os01g14790
Os.38074.1.S1_x_at--418--10531Chr01:8269066..8269090 (25 bp)
TTCAGCCCAGAGTGTGAACCACAGA
LOC_Os01g14790
Os.38074.1.S1_x_at--292--1371Chr01:8269173..8269197 (25 bp)
AGAGCTAGGTAGCAAACCTCTGTAT
LOC_Os01g14790
Target Sequence 
GCCTCGCCGAGTAGTTCTGATTCGATTCAATCGATTGCCAGAGACTGTCGATACTGAAATTCCAAAACTAATTCCAAAAG
AAGAGTTAGGTTTTCTTACTGCTGGCGTCTTCTCTGTTGGCGGTGCCCTTTCTTTCTGGGTGCTCTGCCGCCTTCACTAC
GGTCCAAGAATAACAGTTCCAAGGAGTCTCAGGTGGGCATCATGCGGAGCAATCTCTGTGAGCTCAGCATCGGCATTGCT
CGTGCGACTCTTCAGCCCAGAGTGTGAACCACAGAATATAGCAGCTTATGACAAACTTGGACACAAGACTGGATAGTATT
ATAGAAATATTAGGTCTTGATCATCATCTAAAGAATTAGAGCTAGGTAGCAAACCTCTGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38074.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis