Browse Element(s) Details


Os.49444.1.S1_at

Description gb:AK061130.1
DB_XREF= gi:32971148
TID=Os.49444.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49444 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033070K07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-207-H10, full insert sequence.
FL= gb:AK101880.1 gb:AK061130.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1479011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g14760OsAffx.23249.1.S1_at11/111+8244542..8245306hypothetical protein
LOC_Os01g14770OsAffx.22233.5.S1_x_at11/111+8256318..8258315expressed protein
LOC_Os01g14780NANA1+8264713..8266071hypothetical protein
LOC_Os01g14790Os.49444.1.S1_at11/111+8266390..8269429expressed protein
LOC_Os01g14790Os.38074.1.S1_s_at11/111+8266390..8269429expressed protein
LOC_Os01g14790Os.49444.1.S1_s_at11/111+8266390..8269429expressed protein
LOC_Os01g14790Os.38074.1.S1_x_at10/111+8266390..8269429expressed protein
LOC_Os01g14790Os.38074.1.S1_at7/111+8266390..8269429expressed protein
LOC_Os01g14790OsAffx.20033.1.S1_at1/111+8266390..8269429expressed protein
LOC_Os01g14800OsAffx.22232.1.S1_at7/111+8270288..8270743hypothetical protein
LOC_Os01g14810Os.14625.1.S1_at11/111+8272276..82807615' nucleotidase family protein, putative, expressed
LOC_Os01g14820Os.33563.1.A1_at11/111+8281271..8285922expressed protein
LOC_Os01g14820Os.43805.1.S1_x_at11/111+8281271..8285922expressed protein
LOC_Os01g14820Os.43805.1.S1_at11/111+8281271..8285922expressed protein
LOC_Os01g14830Os.9946.1.S1_at11/111+8288164..829295950S ribosomal protein L3-2, chloroplast precursor, putative, expressed
LOC_Os01g14840Os.307.1.S2_at11/111+8294417..8299203expressed protein
LOC_Os01g14840Os.307.1.S1_at11/111+8294417..8299203expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49444.1.S1_at--390--8511Chr01:8268729..8268753 (25 bp)
TGGCACTCCGGCGAGCACTGGGATG
LOC_Os01g14790
Os.49444.1.S1_at--441--7651Chr01:8268762..8268786 (25 bp)
GGGAGGTAATGCGTCCAGAGTCTAA
LOC_Os01g14790
Os.49444.1.S1_at--402--7071Chr01:8268767..8268791 (25 bp)
GTAATGCGTCCAGAGTCTAAGCCTT
LOC_Os01g14790
Os.49444.1.S1_at--687--611Chr01:8268770..8268794 (25 bp)
ATGCGTCCAGAGTCTAAGCCTTGCT
LOC_Os01g14790
Os.49444.1.S1_at--1085--1331Chr01:8268778..8268802 (25 bp)
AGAGTCTAAGCCTTGCTCCCGGTTG
LOC_Os01g14790
Os.49444.1.S1_at--509--3731Chr01:8268783..8268807 (25 bp)
CTAAGCCTTGCTCCCGGTTGATGCG
LOC_Os01g14790
Os.49444.1.S1_at--656--6651Chr01:8268799..8268823 (25 bp)
GTTGATGCGACAGACTGCTGGCGTC
LOC_Os01g14790
Os.49444.1.S1_at--406--6351Chr01:8268802..8268826 (25 bp)
GATGCGACAGACTGCTGGCGTCTTC
LOC_Os01g14790
Os.49444.1.S1_at--822--8151Chr01:8269371..8269395 (25 bp)
GGAAACACGCTAGGTTTGTTGTTCT
LOC_Os01g14790
Os.49444.1.S1_at--1007--2471Chr01:8269374..8269398 (25 bp)
AACACGCTAGGTTTGTTGTTCTGTG
LOC_Os01g14790
Os.49444.1.S1_at--1134--4111Chr01:8269378..8269402 (25 bp)
CGCTAGGTTTGTTGTTCTGTGGGTT
LOC_Os01g14790
Target Sequence 
TGGCACTCCGGCGAGCACTGGGATGGTCAGAGGGGGAGGTAATGCGTCCAGAGTCTAAGCCTTGCTCCCGGTTGATGCGA
CAGACTGCTGGCGTCTTCTCTGTTGGCGGTGCCCTTTCTTTCTGGGTGCTCTGCCGCCTTCACTACGGTCCAAGAATAAC
AGTTCCAAGGAGTCTCAGGTGGGCATCATGCGGAGCAATCTCTGTGAGCTCAGCATCGGCATTGCTCGTGCGACTCTTCA
GCCCAGAGTGTGAACCACAGAATATAGCAGCTTATGACAAACTTGGACACAAGACTGGATAGTATTATAGAAATATTAGG
TCTTGATCATCATCTAAAGAATTAGAGCTAGGTAGCAAACCTCTGTATCGTTTGCTGATTCAGTCTAGGAGATATATTGT
ATGTCTTTTTCTGGAAGATGTTTATGCATGATGTAACTTGGCCTGAAGACCTTCCCTCCATAGGAGTATCCACTTCACTG
GCTGCCGTGGACAATGATTGTTATTATTTTACCTGAAACCTGATGGGTTTAATAAGTTTAAGGAAACACGCTAGGTTTGT
TGTTCTGTGGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49444.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis