Browse Element(s) Details


Os.49444.1.S1_s_at

Description gb:AK061130.1
DB_XREF= gi:32971148
TID=Os.49444.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49444 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033070K07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-207-H10, full insert sequence.
FL= gb:AK101880.1 gb:AK061130.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1479011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g14760OsAffx.23249.1.S1_at11/111+8244542..8245306hypothetical protein
LOC_Os01g14770OsAffx.22233.5.S1_x_at11/111+8256318..8258315expressed protein
LOC_Os01g14780NANA1+8264713..8266071hypothetical protein
LOC_Os01g14790Os.49444.1.S1_at11/111+8266390..8269429expressed protein
LOC_Os01g14790Os.38074.1.S1_s_at11/111+8266390..8269429expressed protein
LOC_Os01g14790Os.49444.1.S1_s_at11/111+8266390..8269429expressed protein
LOC_Os01g14790Os.38074.1.S1_x_at10/111+8266390..8269429expressed protein
LOC_Os01g14790Os.38074.1.S1_at7/111+8266390..8269429expressed protein
LOC_Os01g14790OsAffx.20033.1.S1_at1/111+8266390..8269429expressed protein
LOC_Os01g14800OsAffx.22232.1.S1_at7/111+8270288..8270743hypothetical protein
LOC_Os01g14810Os.14625.1.S1_at11/111+8272276..82807615' nucleotidase family protein, putative, expressed
LOC_Os01g14820Os.33563.1.A1_at11/111+8281271..8285922expressed protein
LOC_Os01g14820Os.43805.1.S1_x_at11/111+8281271..8285922expressed protein
LOC_Os01g14820Os.43805.1.S1_at11/111+8281271..8285922expressed protein
LOC_Os01g14830Os.9946.1.S1_at11/111+8288164..829295950S ribosomal protein L3-2, chloroplast precursor, putative, expressed
LOC_Os01g14840Os.307.1.S2_at11/111+8294417..8299203expressed protein
LOC_Os01g14840Os.307.1.S1_at11/111+8294417..8299203expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49444.1.S1_s_at--465--5591Chr01:8269139..8269163 (25 bp)
GAAATATTAGGTCTTGATCATCATC
LOC_Os01g14790
Os.49444.1.S1_s_at--715--7811Chr01:8269148..8269172 (25 bp)
GGTCTTGATCATCATCTAAAGAATT
LOC_Os01g14790
Os.49444.1.S1_s_at--812--2631Chr01:8269187..8269211 (25 bp)
AACCTCTGTATCGTTTGCTGATTCA
LOC_Os01g14790
Os.49444.1.S1_s_at--1086--6891Chr01:8269194..8269218 (25 bp)
GTATCGTTTGCTGATTCAGTCTAGG
LOC_Os01g14790
Os.49444.1.S1_s_at--325--4751Chr01:8269203..8269227 (25 bp)
GCTGATTCAGTCTAGGAGATATATT
LOC_Os01g14790
Os.49444.1.S1_s_at--854--6511Chr01:8269220..8269244 (25 bp)
GATATATTGTATGTCTTTTTCTGGA
LOC_Os01g14790
Os.49444.1.S1_s_at--575--6271Chr01:8269259..8269283 (25 bp)
GATGTAACTTGGCCTGAAGACCTTC
LOC_Os01g14790
Os.49444.1.S1_s_at--513--5351Chr01:8269274..8269298 (25 bp)
GAAGACCTTCCCTCCATAGGAGTAT
LOC_Os01g14790
Os.49444.1.S1_s_at--806--271Chr01:8269289..8269313 (25 bp)
ATAGGAGTATCCACTTCACTGGCTG
LOC_Os01g14790
Os.49444.1.S1_s_at--455--4371Chr01:8269299..8269323 (25 bp)
CCACTTCACTGGCTGCCGTGGACAA
LOC_Os01g14790
Os.49444.1.S1_s_at--988--151Chr01:8269332..8269356 (25 bp)
ATTATTTTACCTGAAACCTGATGGG
LOC_Os01g14790
Target Sequence 
GAAATATTAGGTCTTGATCATCATCTAAAGAATTAGAGCTAGGTAGCAAACCTCTGTATCGTTTGCTGATTCAGTCTAGG
AGATATATTGTATGTCTTTTTCTGGAAGATGTTTATGCATGATGTAACTTGGCCTGAAGACCTTCCCTCCATAGGAGTAT
CCACTTCACTGGCTGCCGTGGACAATGATTGTTATTATTTTACCTGAAACCTGATGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49444.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis