Browse Element(s) Details


OsAffx.20033.1.S1_at

Description tigr:9640.m03869
TID=OsAffx.20033.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=protein kinase-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3963011/11Serine/threonine-protein kinase SAPK9, putative, expressed
LOC_Os01g147901/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g39600NANA12+24406461..24409368retrotransposon protein, putative, unclassified
LOC_Os12g39610NANA12+24410223..24415808retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g39620Os.46182.1.S1_at11/1112+24421410..24425728Leucine Rich Repeat family protein, expressed
LOC_Os12g39630OsAffx.20033.1.S1_at11/1112+24424607..24428455Serine/threonine-protein kinase SAPK9, putative, expressed
LOC_Os12g39630Os.15247.1.S1_s_at11/1112+24424607..24428455Serine/threonine-protein kinase SAPK9, putative, expressed
LOC_Os12g39640Os.47453.1.A1_s_at11/1112+24441550..24444297myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os12g39640OsAffx.20034.1.S1_x_at11/1112+24441550..24444297myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os12g39640Os.47453.1.A1_at11/1112+24441550..24444297myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os12g39640OsAffx.16011.1.S1_at1/1112+24441550..24444297myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os12g39650Os.27347.1.S1_a_at4/1112+24445323..24449233expressed protein
LOC_Os12g39660Os.9632.1.S2_at11/1112+24451753..24457437Calcium-transporting ATPase 2, plasma membrane-type, putative, expressed
LOC_Os12g39660Os.9632.1.S1_at11/1112+24451753..24457437Calcium-transporting ATPase 2, plasma membrane-type, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009414biological_processresponse to water deprivation
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009738biological_processabscisic acid mediated signaling
GO:0010119biological_processregulation of stomatal movement
GO:0004672molecular_functionprotein kinase activity
GO:0009931molecular_functioncalcium-dependent protein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20033.1.S1_at--133--771Chr12:24425237..24425261 (25 bp)
ATGTCGATCTTCTCCAGGCTTGTCA
LOC_Os12g39630
OsAffx.20033.1.S1_at--1047--9631Chr12:24425215..24425239 (25 bp)
TCAGGTGACCGAGCTCCTCAGGGAG
LOC_Os12g39630
OsAffx.20033.1.S1_at--325--7591Chr12:24425195..24425219 (25 bp)
GGGAGGTCCGTCAGGTTGACACACT
LOC_Os12g39630
OsAffx.20033.1.S1_at--422--10531Chr12:24425144..24425168 (25 bp)
TTCAGGCTGCATACCGAAGGCGGGA
LOC_Os12g39630
OsAffx.20033.1.S1_at--448--8271Chr12:24425104..24425128 (25 bp)
GGCAGGCGTATACCCTTAGGATGCT
LOC_Os12g39630
OsAffx.20033.1.S1_at--979--9031Chr12:24425072..24425096 (25 bp)
TGCAGCTTGCCCAGCTCATATGGAA
LOC_Os12g39630
OsAffx.20033.1.S1_at--542--631Chr12:24425015..24425039 (25 bp)
ATGCTCTCCAGGGAACTGATTTCAC
LOC_Os12g39630
OsAffx.20033.1.S1_at--848--1591Chr12:24424976..24425000 (25 bp)
AGCTCCTTCAGGTCTATGCAGTGGT
LOC_Os12g39630
OsAffx.20033.1.S1_at--165--8731Chr12:24424923..24424947 (25 bp)
TGTCATCGAGAGATCCACCTTTGAT
LOC_Os12g39630
OsAffx.20033.1.S1_at--35--10792Chr01:8268410..8268758 (25 bp)
TTGATCCTCTCAGACTGTTGGTCAG
LOC_Os01g14790
OsAffx.20033.1.S1_at--275--7951Chr12:24424863..24424887 (25 bp)
GGATATCTTGCGCAGGTTCTTCAGT
LOC_Os12g39630
Target Sequence 
ATGTCGATCTTCTCCAGGCTTGTCAGGTGACCGAGCTCCTCAGGGAGGTCCGTCAGGTTGACACACTGCGAAATGTCGAG
GTATTTCAGCCTCTTCAGGCTGCATACCGAAGGCGGGAGCCGCCACAGAGCCGGGCAGGCGTATACCCTTAGGATGCTCA
GGCAATGCAGCTTGCCCAGCTCATATGGAAGCTCTGTGAGGTCATGGCAGTTTGAGATGGAGATGCTCTCCAGGGAACTG
ATTTCACATATGCTAGATGGTAGCTCCTTCAGGTCTATGCAGTGGTCAATGGTGAGGTTGGATAGGCGCGGGAATGTCAT
CGAGAGATCCACCTTTGATCCTCTCAGACTGTTGGTCAGCTCACAGAGGACAAGGGATATCTTGCGCAGGTTCTTCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20033.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis