Browse Element(s) Details


Os.9632.1.S1_at

Description gb:AK100436.1
DB_XREF= gi:32985645
TID=Os.9632.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9632 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023088M17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023088M17, full insert sequence.
FL= gb:AK066259.1 gb:AK100436.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3966011/11Calcium-transporting ATPase 2, plasma membrane-type, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g39630OsAffx.20033.1.S1_at11/1112+24424607..24428455Serine/threonine-protein kinase SAPK9, putative, expressed
LOC_Os12g39630Os.15247.1.S1_s_at11/1112+24424607..24428455Serine/threonine-protein kinase SAPK9, putative, expressed
LOC_Os12g39640Os.47453.1.A1_s_at11/1112+24441550..24444297myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os12g39640OsAffx.20034.1.S1_x_at11/1112+24441550..24444297myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os12g39640Os.47453.1.A1_at11/1112+24441550..24444297myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os12g39640OsAffx.16011.1.S1_at1/1112+24441550..24444297myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os12g39650Os.27347.1.S1_a_at4/1112+24445323..24449233expressed protein
LOC_Os12g39660Os.9632.1.S2_at11/1112+24451753..24457437Calcium-transporting ATPase 2, plasma membrane-type, putative, expressed
LOC_Os12g39660Os.9632.1.S1_at11/1112+24451753..24457437Calcium-transporting ATPase 2, plasma membrane-type, putative, expressed
LOC_Os12g39670OsAffx.32099.1.S1_at9/1112+24458983..24467282hypothetical protein
LOC_Os12g39670Os.27541.1.A1_at2/1112+24458983..24467282hypothetical protein
LOC_Os12g39670Os.50246.1.S2_at1/1112+24458983..24467282hypothetical protein
LOC_Os12g39670Os.35524.1.S2_at1/1112+24458983..24467282hypothetical protein
LOC_Os12g39680OsAffx.20035.1.S1_at11/1112+24468227..24471462expressed protein
LOC_Os12g39690OsAffx.7837.1.S1_at11/1112+24472744..24473172hypothetical protein
LOC_Os12g39700NANA12+24481038..24491950retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0005773cellular_componentvacuole
GO:0005789cellular_componentendoplasmic reticulum membrane
GO:0009706cellular_componentchloroplast inner membrane
GO:0005262molecular_functioncalcium channel activity
GO:0005388molecular_functioncalcium-transporting ATPase activity
GO:0005516molecular_functioncalmodulin binding
GO:0015085molecular_functioncalcium ion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9632.1.S1_at--302--3151Chr12:24455023..24455132 (25 bp)
AATTCAGGTAATGGCCCGATCATCA
LOC_Os12g39660
Os.9632.1.S1_at--311--2351Chr12:24455156..24455180 (25 bp)
AAAGCATTTGCGCACAACATTCAAT
LOC_Os12g39660
Os.9632.1.S1_at--755--6351Chr12:24455214..24455238 (25 bp)
GATGCGCCTGCGCTTCATGAAGCAG
LOC_Os12g39660
Os.9632.1.S1_at--947--1331Chr12:24455715..24455739 (25 bp)
AGAGTGCCGATGTCATAATTCTGGA
LOC_Os12g39660
Os.9632.1.S1_at--175--7631Chr12:24455776..24455800 (25 bp)
GGGACGCTCTGTTTACGTCAACATT
LOC_Os12g39660
Os.9632.1.S1_at--983--5711Chr12:24455824..24455848 (25 bp)
GACTGTTAACGTTGTGGCTTTACTT
LOC_Os12g39660
Os.9632.1.S1_at--1053--10331Chr12:24455842..24455866 (25 bp)
TTTACTTGTCAACTTCTCTTCAGCT
LOC_Os12g39660
Os.9632.1.S1_at--716--3651Chr12:24455854..24455877 (24 bp)
CTTCTCTTCAGCTTGCTTTACAGGA
LOC_Os12g39660
Os.9632.1.S1_at--354--2291Chr12:24455959..24455983 (25 bp)
AAATGCACCTCTGACAGCTGTTCAA
LOC_Os12g39660
Os.9632.1.S1_at--936--10811Chr12:24456015..24456039 (25 bp)
TTGGCGCCCTTGCATTAGCTACCGA
LOC_Os12g39660
Os.9632.1.S1_at--272--4231Chr12:24456036..24456060 (25 bp)
CCGAGCCACCTAACGATGACTTAAT
LOC_Os12g39660
Target Sequence 
AATTCAGGTAATGGCCCGATCATCACCACTTGACAAGCATACACTTGTAAAGCATTTGCGCACAACATTCAATGAAGTTG
TTGCTGTAACTGGTGATGGCACAAATGATGCGCCTGCGCTTCATGAAGCAGATATTGGACTTGCAATGGGCATTGCTGGG
ACTGAGGTGGCGAAAGAGAGTGCCGATGTCATAATTCTGGACGACAACTTCTCCACAATTGTTACTGTTGCCAAATGGGG
ACGCTCTGTTTACGTCAACATTCAAAAGTTTGTGCAGTTTCAGCTGACTGTTAACGTTGTGGCTTTACTTGTCAACTTCT
CTTCAGCTTGCTTTACAGGAAATGCACCTCTGACAGCTGTTCAACTTCTTTGGGTGAACATGATCATGGACACCCTTGGC
GCCCTTGCATTAGCTACCGAGCCACCTAACGATGACTTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9632.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis