Browse Element(s) Details


Os.15247.1.S1_s_at

Description gb:AB125310.1
DB_XREF= gi:46917345
GEN=SAPK9
TID=Os.15247.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.15247 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) SAPK9 mRNA for serinethreonine protein kinase SAPK9, complete cds.
PROD=serinethreonine protein kinase SAPK9
FL= gb:AK069697.1 gb:AB125310.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3963011/11Serine/threonine-protein kinase SAPK9, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g39600NANA12+24406461..24409368retrotransposon protein, putative, unclassified
LOC_Os12g39610NANA12+24410223..24415808retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g39620Os.46182.1.S1_at11/1112+24421410..24425728Leucine Rich Repeat family protein, expressed
LOC_Os12g39630OsAffx.20033.1.S1_at11/1112+24424607..24428455Serine/threonine-protein kinase SAPK9, putative, expressed
LOC_Os12g39630Os.15247.1.S1_s_at11/1112+24424607..24428455Serine/threonine-protein kinase SAPK9, putative, expressed
LOC_Os12g39640Os.47453.1.A1_s_at11/1112+24441550..24444297myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os12g39640OsAffx.20034.1.S1_x_at11/1112+24441550..24444297myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os12g39640Os.47453.1.A1_at11/1112+24441550..24444297myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os12g39640OsAffx.16011.1.S1_at1/1112+24441550..24444297myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os12g39650Os.27347.1.S1_a_at4/1112+24445323..24449233expressed protein
LOC_Os12g39660Os.9632.1.S2_at11/1112+24451753..24457437Calcium-transporting ATPase 2, plasma membrane-type, putative, expressed
LOC_Os12g39660Os.9632.1.S1_at11/1112+24451753..24457437Calcium-transporting ATPase 2, plasma membrane-type, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009414biological_processresponse to water deprivation
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009738biological_processabscisic acid mediated signaling
GO:0010119biological_processregulation of stomatal movement
GO:0004672molecular_functionprotein kinase activity
GO:0009931molecular_functioncalcium-dependent protein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15247.1.S1_s_at--693--7871Chr12:24426184..24426208 (25 bp)
GGTTAGCAATCAGTACGAGGAGCCT
LOC_Os12g39630
Os.15247.1.S1_s_at--684--6991Chr12:24426172..24426196 (25 bp)
GTACGAGGAGCCTGACCAGCCGATG
LOC_Os12g39630
Os.15247.1.S1_s_at--140--1231Chr12:24426074..24426098 (25 bp)
AGTTCTTGACTGACAGCCTTGACCT
LOC_Os12g39630
Os.15247.1.S1_s_at--793--271Chr12:24426032..24426056 (25 bp)
ATATGGACTCGGACCTTGACCTTGA
LOC_Os12g39630
Os.15247.1.S1_s_at--525--8931Chr12:24426016..24426040 (25 bp)
TGACCTTGACATTGAGAGCAGCGGA
LOC_Os12g39630
Os.15247.1.S1_s_at--364--3951Chr12:24425995..24426019 (25 bp)
CGGAGAGATCGTATATGCCATGTAA
LOC_Os12g39630
Os.15247.1.S1_s_at--139--2271Chr12:24425938..24425962 (25 bp)
AAATCAGCTTGTTTCAGAGCAGGTA
LOC_Os12g39630
Os.15247.1.S1_s_at--24--5371Chr12:24425905..24425929 (25 bp)
GAAGAGATCTGTGTTCAGGCTACTA
LOC_Os12g39630
Os.15247.1.S1_s_at--1017--911Chr12:24425889..24425913 (25 bp)
AGGCTACTAGGAAGCAGGCTCTGCT
LOC_Os12g39630
Os.15247.1.S1_s_at--797--4771Chr12:24425867..24425891 (25 bp)
GCTGCCTATTAGTTCTTGAGTCTGA
LOC_Os12g39630
Os.15247.1.S1_s_at--1010--10591Chr12:24425840..24425864 (25 bp)
TTCTGATGAACCATACTGCAGCTGA
LOC_Os12g39630
Target Sequence 
GGTTAGCAATCAGTACGAGGAGCCTGACCAGCCGATGCAGAATATGAACGAGATCATGCAGATACTGGCAGAAGCAACAA
TTCCAGCAGCAGGCACCNGTGGAATCAANCAGTTCTTGACTGACAGCCTTGACCTCGACGACGACATGGAGGATATGGAC
TCGGACCTTGACCTTGACATTGAGAGCAGCGGAGAGATCGTATATGCCATGTAATCATCTCAACATTTGCAATGAAACTG
CACTGAAAATCAGCTTGTTTCAGAGCAGGTAGAGCTCCAGAAGAGATCTGTGTTCAGGCTACTAGGAAGCAGGCTCTGCT
GCCTATTAGTTCTTGAGTCTGAATTTCTGATGAACCATACTGCAGCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15247.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis