Browse Element(s) Details


Os.47453.1.A1_s_at

Description gb:BX898752
DB_XREF= gi:40487874
DB_XREF=BX898752
CLONE=y731e02p3
TID=Os.47453.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.47453 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_027544.1 (A.thaliana) expressed protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3964011/11myb-like DNA-binding domain, SHAQKYF class family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g39620Os.46182.1.S1_at11/1112+24421410..24425728Leucine Rich Repeat family protein, expressed
LOC_Os12g39630OsAffx.20033.1.S1_at11/1112+24424607..24428455Serine/threonine-protein kinase SAPK9, putative, expressed
LOC_Os12g39630Os.15247.1.S1_s_at11/1112+24424607..24428455Serine/threonine-protein kinase SAPK9, putative, expressed
LOC_Os12g39640Os.47453.1.A1_s_at11/1112+24441550..24444297myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os12g39640OsAffx.20034.1.S1_x_at11/1112+24441550..24444297myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os12g39640Os.47453.1.A1_at11/1112+24441550..24444297myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os12g39640OsAffx.16011.1.S1_at1/1112+24441550..24444297myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os12g39650Os.27347.1.S1_a_at4/1112+24445323..24449233expressed protein
LOC_Os12g39660Os.9632.1.S2_at11/1112+24451753..24457437Calcium-transporting ATPase 2, plasma membrane-type, putative, expressed
LOC_Os12g39660Os.9632.1.S1_at11/1112+24451753..24457437Calcium-transporting ATPase 2, plasma membrane-type, putative, expressed
LOC_Os12g39670OsAffx.32099.1.S1_at9/1112+24458983..24467282hypothetical protein
LOC_Os12g39670Os.27541.1.A1_at2/1112+24458983..24467282hypothetical protein
LOC_Os12g39670Os.50246.1.S2_at1/1112+24458983..24467282hypothetical protein
LOC_Os12g39670Os.35524.1.S2_at1/1112+24458983..24467282hypothetical protein
LOC_Os12g39680OsAffx.20035.1.S1_at11/1112+24468227..24471462expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47453.1.A1_s_at--156--391Chr12:24443709..24443733 (25 bp)
ATCAGACGGTTGGCGGCCGTCTATG
LOC_Os12g39640
Os.47453.1.A1_s_at--542--9351Chr12:24443762..24443786 (25 bp)
TCGCAGCACAGCACATCGCAGTCTG
LOC_Os12g39640
Os.47453.1.A1_s_at--46--3471Chr12:24443838..24443862 (25 bp)
CAGTGACCGCCGGCGATAGCTGCGA
LOC_Os12g39640
Os.47453.1.A1_s_at--284--1571Chr12:24443900..24443924 (25 bp)
AGCTATAGCTGGGAGATGCAGAATG
LOC_Os12g39640
Os.47453.1.A1_s_at--941--3552Chr12:24443937..24443961 (25 bp)
CATCATCATCTTGAGCACCATTAAT
LOC_Os12g39640
Os.47453.1.A1_s_at--362--5091Chr12:24443951..24443975 (25 bp)
GCACCATTAATTAATTGTCTCCAGG
LOC_Os12g39640
Os.47453.1.A1_s_at--734--4751Chr12:24443977..24444001 (25 bp)
GCTGCACAGCAGCAGTGACCGAAGA
LOC_Os12g39640
Os.47453.1.A1_s_at--383--7371Chr12:24443991..24444015 (25 bp)
GTGACCGAAGAACTTAGGCCTATTT
LOC_Os12g39640
Os.47453.1.A1_s_at--1105--5451Chr12:24444000..24444024 (25 bp)
GAACTTAGGCCTATTTCTGTACAGT
LOC_Os12g39640
Os.47453.1.A1_s_at--182--3671Chr12:24444003..24444027 (25 bp)
CTTAGGCCTATTTCTGTACAGTGGT
LOC_Os12g39640
Os.47453.1.A1_s_at--353--4451Chr12:24444008..24444032 (25 bp)
GCCTATTTCTGTACAGTGGTTGAGA
LOC_Os12g39640
Target Sequence 
ATCAGACGGTTGGCGGCCGTCTATGGCCGCNGCCACCNGAGCAATACACCACCTCGCAGCACAGCACATCGCAGTCTGGC
TCGCCGCAGGGCCCCNTCCAGNTCACCGTNTCNTCGANCCACNCCGTGTCAGTGACCGCCGGCGATAGCTGCGACGNCGN
TNNNGAGGAGGAAGAGGAGGACGGGAANTCGGGGAGCTATAGCTGGGAGATGCAGAATGGGNCAAGGGCATCATCATCAT
CTTGAGCACCATTAATTAATTGTCTCCAGGTGCTGCACAGCAGCAGTGACCGAAGAACTTAGGCCTATTTCTGTACAGTG
GTTGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47453.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis