Browse Element(s) Details


Os.27541.1.A1_at

Description gb:CB635942
DB_XREF= gi:29630933
DB_XREF=OSIIEb16N18.r
CLONE=OSIIEb16N18
TID=Os.27541.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.27541 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_173464.1 (A.thaliana) hypothetical protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g581602/11hypothetical protein
LOC_Os12g396702/11hypothetical protein
LOC_Os02g208401/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g232481/11
LOC_Os09g124801/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g58114Os.10123.2.S1_x_at10/111+33936195..33943176expressed protein
LOC_Os01g58114Os.10123.1.S1_at10/111+33936195..33943176expressed protein
LOC_Os01g58114OsAffx.21000.1.S1_at1/111+33936195..33943176expressed protein
LOC_Os01g58130Os.6683.1.S1_at11/111+33945219..33946022expressed protein
LOC_Os01g58140Os.7983.1.S1_at11/111+33952135..33952891expressed protein
LOC_Os01g58150Os.36901.1.S1_at11/111+33956407..33957868expressed protein
LOC_Os01g58160Os.27541.1.A1_at2/111+33960068..33962191hypothetical protein
LOC_Os01g58160OsAffx.1396.1.S1_x_at1/111+33960068..33962191hypothetical protein
LOC_Os01g58170OsAffx.23834.1.S1_at10/111+33965457..33966349hypothetical protein
LOC_Os01g58194Os.42305.2.S1_x_at11/111+33968802..33977777protein disulfide isomerase, putative, expressed
LOC_Os01g58194Os.8427.1.S1_s_at11/111+33968802..33977777protein disulfide isomerase, putative, expressed
LOC_Os01g58194Os.42305.1.S1_s_at11/111+33968802..33977777protein disulfide isomerase, putative, expressed
LOC_Os01g58194Os.35273.2.S1_at2/111+33968802..33977777protein disulfide isomerase, putative, expressed
LOC_Os01g58194Os.35273.2.S1_x_at1/111+33968802..33977777protein disulfide isomerase, putative, expressed
LOC_Os01g58220Os.38804.1.S1_at10/111+33977992..33982027Protein translation factor SUI1 homolog, putative, expressed
LOC_Os01g58220OsAffx.10645.5.S1_x_at9/111+33977992..33982027Protein translation factor SUI1 homolog, putative, expressed
LOC_Os01g58220Os.52686.1.S1_at2/111+33977992..33982027Protein translation factor SUI1 homolog, putative, expressed
LOC_Os01g58230OsAffx.25270.2.S1_x_at4/111+33982822..33985050hypothetical protein
LOC_Os01g58230OsAffx.5723.1.S1_x_at4/111+33982822..33985050hypothetical protein
LOC_Os01g58230OsAffx.25270.2.S1_at3/111+33982822..33985050hypothetical protein
LOC_Os01g58230OsAffx.1248.1.S1_x_at1/111+33982822..33985050hypothetical protein
LOC_Os01g58240Os.30258.1.S1_at11/111+33986630..33990388Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58240Os.30258.2.S1_x_at10/111+33986630..33990388Subtilisin N-terminal Region family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27541.1.A1_at--961--3113Chr09:3945136..3945155 (20 bp)
ATACCCATCATTTATTCATATCCTT
NONE
Os.27541.1.A1_at--1024--1124Chr12:24465209..24465233 (25 bp)
ATTCATATCCTTTTATACATGCGAT
LOC_Os12g39670
Os.27541.1.A1_at--670--331Chr06:16455521..16455545 (25 bp)
ATACATGCGATTGGTTAGTCAACAT
NONE
Os.27541.1.A1_at--308--83130Chr12:24465247..24465271 (25 bp)
TGTGGAGGTTGACAACCGGATCATT
LOC_Os12g39670
Os.27541.1.A1_at--984--5571Chr06:16455441..16455465 (25 bp)
GAAATAGGCCCCAAGGATTGCAAAG
NONE
Os.27541.1.A1_at--1159--1093Chr03:25489212..25489236 (25 bp)
AGTGATATCACTACACCTAAAGATA
NONE
Os.27541.1.A1_at--98--76717Chr12:21557683..21557707 (25 bp)
GGGATACGAAGTGGCTACTATGGCA
NONE
Os.27541.1.A1_at--102--7591Chr06:16455257..16455281 (25 bp)
GGGCTTGGCGCGAAGAACAAAATCC
NONE
Os.27541.1.A1_at--353--10771Chr06:16455208..16455232 (25 bp)
TTGTCATGATGGACTGTGTGAGACC
NONE
Os.27541.1.A1_at--1114--1931Chr06:16455196..16455220 (25 bp)
ACTGTGTGAGACCATTTGAAGCTAC
NONE
Os.27541.1.A1_at--682--1571Chr06:16455177..16455201 (25 bp)
AGCTACAAGTAACCGCATGCTTTGT
NONE
Target Sequence 
ATACCCATCATTTATTCATATCCTTTTATACATGCGATTGGTTAGTCAACATGTGGAGGTTGACAACCGGATCATTGAGA
NTAATAATTTCATTGAGTTGAATGAGAGAAATAGGCCCCAAGGATTGCAAAGGTATTGATGCTCAAGTGATATCACTACA
CCTAAAGATACCAANGATGACAAAGTGAAGATATTGAAGATGTGGGATACGAAGTGGCTACTATGGCAAGANGGTGAAGG
GCAAGCGATGCTCGGTCACGATGGACCATGCGGTGGTGAAGGGCAAGCAAGGGGCTTGGCGCGAAGAACAAAATCCGGTG
GTGAAGGGCGAGTGACGNCTTTGTCATGATGGACTGTGTGAGACCATTTGAAGCTACAAGTAACCGCATGCTTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27541.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis