Browse Element(s) Details


Os.36901.1.S1_at

Description gb:AK062404.1
DB_XREF= gi:32972422
TID=Os.36901.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.36901 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0684C02.11 (P0684C02.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-102-E06, full insert sequence.
FL= gb:AK062404.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5815011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g58100OsAffx.9503.1.S1_at11/111+33928178..33932108Common central domain of tyrosinase family protein
LOC_Os01g58114Os.10123.2.S1_x_at10/111+33936195..33943176expressed protein
LOC_Os01g58114Os.10123.1.S1_at10/111+33936195..33943176expressed protein
LOC_Os01g58114OsAffx.21000.1.S1_at1/111+33936195..33943176expressed protein
LOC_Os01g58130Os.6683.1.S1_at11/111+33945219..33946022expressed protein
LOC_Os01g58140Os.7983.1.S1_at11/111+33952135..33952891expressed protein
LOC_Os01g58150Os.36901.1.S1_at11/111+33956407..33957868expressed protein
LOC_Os01g58160Os.27541.1.A1_at2/111+33960068..33962191hypothetical protein
LOC_Os01g58160OsAffx.1396.1.S1_x_at1/111+33960068..33962191hypothetical protein
LOC_Os01g58170OsAffx.23834.1.S1_at10/111+33965457..33966349hypothetical protein
LOC_Os01g58194Os.42305.2.S1_x_at11/111+33968802..33977777protein disulfide isomerase, putative, expressed
LOC_Os01g58194Os.8427.1.S1_s_at11/111+33968802..33977777protein disulfide isomerase, putative, expressed
LOC_Os01g58194Os.42305.1.S1_s_at11/111+33968802..33977777protein disulfide isomerase, putative, expressed
LOC_Os01g58194Os.35273.2.S1_at2/111+33968802..33977777protein disulfide isomerase, putative, expressed
LOC_Os01g58194Os.35273.2.S1_x_at1/111+33968802..33977777protein disulfide isomerase, putative, expressed
LOC_Os01g58220Os.38804.1.S1_at10/111+33977992..33982027Protein translation factor SUI1 homolog, putative, expressed
LOC_Os01g58220OsAffx.10645.5.S1_x_at9/111+33977992..33982027Protein translation factor SUI1 homolog, putative, expressed
LOC_Os01g58220Os.52686.1.S1_at2/111+33977992..33982027Protein translation factor SUI1 homolog, putative, expressed
LOC_Os01g58230OsAffx.25270.2.S1_x_at4/111+33982822..33985050hypothetical protein
LOC_Os01g58230OsAffx.5723.1.S1_x_at4/111+33982822..33985050hypothetical protein
LOC_Os01g58230OsAffx.25270.2.S1_at3/111+33982822..33985050hypothetical protein
LOC_Os01g58230OsAffx.1248.1.S1_x_at1/111+33982822..33985050hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36901.1.S1_at--437--6151Chr01:33956731..33956755 (25 bp)
GAGGTCTACCACCAGCACTACAGGG
LOC_Os01g58150
Os.36901.1.S1_at--1062--1471Chr01:33956718..33956742 (25 bp)
AGCACTACAGGGTGGCGCACTGGAA
LOC_Os01g58150
Os.36901.1.S1_at--1027--831Chr01:33956662..33956686 (25 bp)
ATGGAGTCATGACACGTCCTGCAGT
LOC_Os01g58150
Os.36901.1.S1_at--644--1091Chr01:33956640..33956664 (25 bp)
AGTGGCGTGGCCAACTTCGTTTGCT
LOC_Os01g58150
Os.36901.1.S1_at--468--10631Chr01:33956625..33956649 (25 bp)
TTCGTTTGCTTTTCTCTGGCTGCAT
LOC_Os01g58150
Os.36901.1.S1_at--700--571Chr01:33956602..33956626 (25 bp)
ATCCTTGCAGCTTCGTTCGATGGAA
LOC_Os01g58150
Os.36901.1.S1_at--957--3351Chr01:33956575..33956599 (25 bp)
CAGCTTTTTTGTGACCTATGGGTGT
LOC_Os01g58150
Os.36901.1.S1_at--457--811Chr01:33956558..33956582 (25 bp)
ATGGGTGTTGTTGTTCTCTCCTAGC
LOC_Os01g58150
Os.36901.1.S1_at--431--9251Chr01:33956540..33956564 (25 bp)
TCCTAGCTCAGATTCCACGAACGAT
LOC_Os01g58150
Os.36901.1.S1_at--953--5351Chr01:33956469..33956493 (25 bp)
GAAGATGATCTGTCGTCCACAATCC
LOC_Os01g58150
Os.36901.1.S1_at--104--8731Chr01:33956459..33956483 (25 bp)
TGTCGTCCACAATCCATTACTGAGA
LOC_Os01g58150
Target Sequence 
GAGGTCTACCACCAGCACTACAGGGTGGCGCACTGGAAGCCCGCGCTGCAGAGCATCCCGGAGGCCGCCATGGAGTCATG
ACACGTCCTGCAGTGGCGTGGCCAACTTCGTTTGCTTTTCTCTGGCTGCATCCTTGCAGCTTCGTTCGATGGAACACAGC
TTTTTTGTGACCTATGGGTGTTGTTGTTCTCTCCTAGCTCAGATTCCACGAACGATGTAAATTAGTAGGATGATTAAGTG
ATGACAGATACAACGGTGTAAAGAAGATGATCTGTCGTCCACAATCCATTACTGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36901.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis