Browse Element(s) Details


OsAffx.9503.1.S1_at

Description tigr:9629.m05699
TID=OsAffx.9503.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Common central domain of tyrosinase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5810011/11Common central domain of tyrosinase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g58060OsAffx.32320.1.S1_at11/111+33908098..33916953hypothetical protein
LOC_Os01g58060OsAffx.24369.1.S2_at11/111+33908098..33916953hypothetical protein
LOC_Os01g58060OsAffx.24407.2.S1_s_at11/111+33908098..33916953hypothetical protein
LOC_Os01g58060Os.27314.1.S1_at11/111+33908098..33916953hypothetical protein
LOC_Os01g58060OsAffx.24407.1.S1_at9/111+33908098..33916953hypothetical protein
LOC_Os01g58070OsAffx.2355.1.S1_at11/111+33917484..33918509Common central domain of tyrosinase family protein
LOC_Os01g58080Os.4953.2.S1_x_at11/111+33920592..33924187membrane-associated salt-inducible protein, putative, expressed
LOC_Os01g58080Os.4953.1.S1_at11/111+33920592..33924187membrane-associated salt-inducible protein, putative, expressed
LOC_Os01g58100OsAffx.9503.1.S1_at11/111+33928178..33932108Common central domain of tyrosinase family protein
LOC_Os01g58114Os.10123.2.S1_x_at10/111+33936195..33943176expressed protein
LOC_Os01g58114Os.10123.1.S1_at10/111+33936195..33943176expressed protein
LOC_Os01g58114OsAffx.21000.1.S1_at1/111+33936195..33943176expressed protein
LOC_Os01g58130Os.6683.1.S1_at11/111+33945219..33946022expressed protein
LOC_Os01g58140Os.7983.1.S1_at11/111+33952135..33952891expressed protein
LOC_Os01g58150Os.36901.1.S1_at11/111+33956407..33957868expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9503.1.S1_at--847--9251Chr01:33928732..33928756 (25 bp)
TCCTCGTTTCTCTTCTACGATGAGG
LOC_Os01g58100
OsAffx.9503.1.S1_at--380--711Chr01:33928713..33928737 (25 bp)
ATGAGGAGGCCCGTCTTGTGCGCAT
LOC_Os01g58100
OsAffx.9503.1.S1_at--1091--5651Chr01:33928669..33928693 (25 bp)
GACATGGACAAGCTCCGATACACGT
LOC_Os01g58100
OsAffx.9503.1.S1_at--916--9851Chr01:33928651..33928675 (25 bp)
TACACGTATCGTGGCGTTGGTTTAC
LOC_Os01g58100
OsAffx.9503.1.S1_at--853--10451Chr01:33928630..33928654 (25 bp)
TTACCATGGTTGGATGCACGGCCAC
LOC_Os01g58100
OsAffx.9503.1.S1_at--580--5971Chr01:33928564..33928588 (25 bp)
GAGAAGCCCGTCATGTTTCCAGTAT
LOC_Os01g58100
OsAffx.9503.1.S1_at--233--10691Chr01:33928548..33928572 (25 bp)
TTCCAGTATCCCTTGGCAATGTGGT
LOC_Os01g58100
OsAffx.9503.1.S1_at--567--1391Chr01:33928510..33928534 (25 bp)
AGACGACCGCTAATGTTGTGGAGAC
LOC_Os01g58100
OsAffx.9503.1.S1_at--407--7731Chr01:33928454..33928478 (25 bp)
GGTGGTCGAGCACATCCAGACAGAT
LOC_Os01g58100
OsAffx.9503.1.S1_at--908--771Chr01:33928360..33928384 (25 bp)
ATGGTCGGGAGCTTTGTGTGTTTAA
LOC_Os01g58100
OsAffx.9503.1.S1_at--457--7371Chr01:33928228..33928252 (25 bp)
GTGACTGTGACTTTGGTGCCAAGAC
LOC_Os01g58100
Target Sequence 
TCCTCGTTTCTCTTCTACGATGAGGAGGCCCGTCTTGTGCGCATCACCGTCCGTGACGTGCTCGACATGGACAAGCTCCG
ATACACGTATCGTGGCGTTGGTTTACCATGGTTGGATGCACGGCCACCCACTACTCCCAACGTGAAGTACAGAGTGAAAA
ACAGGGTCGAGAAGCCCGTCATGTTTCCAGTATCCCTTGGCAATGTGGTGACCGCAGAGGTGAGACGACCGCTAATGTTG
TGGAGACAGCCAAAAGGGGCAACACAAGAGGAGGTGCTGGTGGTCGAGCACATCCAGACAGATGGCGTGTGCAAGTTTGA
TGTGTTTGTCAATGCTAGGGAGCACAAGAAAATCGAGCCATGTGGACGGGAGATGGTCGGGAGCTTTGTGTGTTTAAGGC
ATCACAACACGCAAAACAATGTGACACGGAGAGGGGTACAAACCACCATGAGGGTGGCACTGAATGATATCTTAAAGGAC
CTAGGTGCCGAGCAAGATGAGAGTGTGACTGTGACTTTGGTGCCAAGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9503.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis