Browse Element(s) Details


Os.6683.1.S1_at

Description gb:AK111091.1
DB_XREF= gi:32996300
TID=Os.6683.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.6683 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0684C02.7 (P0684C02.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-175-G02, full insert sequence.
FL= gb:AK111091.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5813011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g58080Os.4953.2.S1_x_at11/111+33920592..33924187membrane-associated salt-inducible protein, putative, expressed
LOC_Os01g58080Os.4953.1.S1_at11/111+33920592..33924187membrane-associated salt-inducible protein, putative, expressed
LOC_Os01g58100OsAffx.9503.1.S1_at11/111+33928178..33932108Common central domain of tyrosinase family protein
LOC_Os01g58114Os.10123.2.S1_x_at10/111+33936195..33943176expressed protein
LOC_Os01g58114Os.10123.1.S1_at10/111+33936195..33943176expressed protein
LOC_Os01g58114OsAffx.21000.1.S1_at1/111+33936195..33943176expressed protein
LOC_Os01g58130Os.6683.1.S1_at11/111+33945219..33946022expressed protein
LOC_Os01g58140Os.7983.1.S1_at11/111+33952135..33952891expressed protein
LOC_Os01g58150Os.36901.1.S1_at11/111+33956407..33957868expressed protein
LOC_Os01g58160Os.27541.1.A1_at2/111+33960068..33962191hypothetical protein
LOC_Os01g58160OsAffx.1396.1.S1_x_at1/111+33960068..33962191hypothetical protein
LOC_Os01g58170OsAffx.23834.1.S1_at10/111+33965457..33966349hypothetical protein
LOC_Os01g58194Os.42305.2.S1_x_at11/111+33968802..33977777protein disulfide isomerase, putative, expressed
LOC_Os01g58194Os.8427.1.S1_s_at11/111+33968802..33977777protein disulfide isomerase, putative, expressed
LOC_Os01g58194Os.42305.1.S1_s_at11/111+33968802..33977777protein disulfide isomerase, putative, expressed
LOC_Os01g58194Os.35273.2.S1_at2/111+33968802..33977777protein disulfide isomerase, putative, expressed
LOC_Os01g58194Os.35273.2.S1_x_at1/111+33968802..33977777protein disulfide isomerase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6683.1.S1_at--720--5931Chr01:33945717..33945741 (25 bp)
GAGCACGTGGCAGAGGTGACCATCA
LOC_Os01g58130
Os.6683.1.S1_at--939--1911Chr01:33945635..33945659 (25 bp)
ACGGGAAGATCAGCCGGCGGTCCAC
LOC_Os01g58130
Os.6683.1.S1_at--1075--4251Chr01:33945529..33945553 (25 bp)
CCTGCAGAGCATTCCGGAGGCCGTG
LOC_Os01g58130
Os.6683.1.S1_at--636--8031Chr01:33945505..33945529 (25 bp)
GGAGTCATGAGTTCCATTCTACGCC
LOC_Os01g58130
Os.6683.1.S1_at--351--10531Chr01:33945489..33945513 (25 bp)
TTCTACGCCTTAAGCTTGGTGGTTA
LOC_Os01g58130
Os.6683.1.S1_at--880--3231Chr01:33945442..33945466 (25 bp)
CAAGAAGTTTGTCGCTTTCCTCCAT
LOC_Os01g58130
Os.6683.1.S1_at--641--6831Chr01:33945417..33945441 (25 bp)
GTTTCTTTTCCATGACCACATTTTC
LOC_Os01g58130
Os.6683.1.S1_at--964--3571Chr01:33945399..33945423 (25 bp)
CATTTTCTTTACTCTGCACCAGATT
LOC_Os01g58130
Os.6683.1.S1_at--1141--10491Chr01:33945375..33945399 (25 bp)
TTAATTTCGGTGCTTATTGATGTGC
LOC_Os01g58130
Os.6683.1.S1_at--1075--5651Chr01:33945306..33945330 (25 bp)
GACATGTACAAAAATCCGCGCGCTC
LOC_Os01g58130
Os.6683.1.S1_at--47--551Chr01:33945293..33945317 (25 bp)
ATCCGCGCGCTCAAAAAGAAGTCGA
LOC_Os01g58130
Target Sequence 
GAGCACGTGGCAGAGGTGACCATCAGGATCACCAAGAGGCAGCTGCACGAGCTGATGGAGCGCAAGGGCGCCGGGAATGG
CCACGGGAAGATCAGCCGGCGGTCCACGCAGCAGCTGCTGGCGGNACATCATGAACTCCGGCGAGGTGCACCACCACGAC
CAGCACAGGGAGGCGCACTGGAAGCCCGCCCTGCAGAGCATTCCGGAGGCCGTGGAGTCATGAGTTCCATTCTACGCCTT
AAGCTTGGTGGTTAAGTCNCCGCTTGATTATTTTTCCAAGAAGTTTGTCGCTTTCCTCCATGTTTCTTTTCCATGACCAC
ATTTTCTTTACTCTGCACCAGATTTAATTTCGGTGCTTATTGATGTGCATAGCTAGAATACATTTGGGTTAATTCATCAA
TTGTTCAGACAGGACATGTACAAAAATCCGCGCGCTCAAAAAGAAGTCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6683.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis