Browse Element(s) Details


Os.35273.2.S1_at

Description gb:NM_187248.1
DB_XREF= gi:34901581
GEN=P0571D04.5
TID=Os.35273.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.35273 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0571D04.7 (P0571D04.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0571D04.5 (P0571D04.5), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g581942/11protein disulfide isomerase, putative, expressed
LOC_Os11g346601/11Protease inhibitor/seed storage/LTP family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g58130Os.6683.1.S1_at11/111+33945219..33946022expressed protein
LOC_Os01g58140Os.7983.1.S1_at11/111+33952135..33952891expressed protein
LOC_Os01g58150Os.36901.1.S1_at11/111+33956407..33957868expressed protein
LOC_Os01g58160Os.27541.1.A1_at2/111+33960068..33962191hypothetical protein
LOC_Os01g58160OsAffx.1396.1.S1_x_at1/111+33960068..33962191hypothetical protein
LOC_Os01g58170OsAffx.23834.1.S1_at10/111+33965457..33966349hypothetical protein
LOC_Os01g58194Os.42305.2.S1_x_at11/111+33968802..33977777protein disulfide isomerase, putative, expressed
LOC_Os01g58194Os.8427.1.S1_s_at11/111+33968802..33977777protein disulfide isomerase, putative, expressed
LOC_Os01g58194Os.42305.1.S1_s_at11/111+33968802..33977777protein disulfide isomerase, putative, expressed
LOC_Os01g58194Os.35273.2.S1_at2/111+33968802..33977777protein disulfide isomerase, putative, expressed
LOC_Os01g58194Os.35273.2.S1_x_at1/111+33968802..33977777protein disulfide isomerase, putative, expressed
LOC_Os01g58220Os.38804.1.S1_at10/111+33977992..33982027Protein translation factor SUI1 homolog, putative, expressed
LOC_Os01g58220OsAffx.10645.5.S1_x_at9/111+33977992..33982027Protein translation factor SUI1 homolog, putative, expressed
LOC_Os01g58220Os.52686.1.S1_at2/111+33977992..33982027Protein translation factor SUI1 homolog, putative, expressed
LOC_Os01g58230OsAffx.25270.2.S1_x_at4/111+33982822..33985050hypothetical protein
LOC_Os01g58230OsAffx.5723.1.S1_x_at4/111+33982822..33985050hypothetical protein
LOC_Os01g58230OsAffx.25270.2.S1_at3/111+33982822..33985050hypothetical protein
LOC_Os01g58230OsAffx.1248.1.S1_x_at1/111+33982822..33985050hypothetical protein
LOC_Os01g58240Os.30258.1.S1_at11/111+33986630..33990388Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58240Os.30258.2.S1_x_at10/111+33986630..33990388Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58260Os.5242.1.S1_at11/111+33994877..33999386Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58260Os.30258.2.S1_x_at1/111+33994877..33999386Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58270OsAffx.23836.1.S1_at11/111+34001253..34006565Subtilisin N-terminal Region family protein

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Gene Ontology Classification
GO idTypeName
GO:0006869biological_processlipid transport
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35273.2.S1_at--688--5411NONE
GAACTTCCTCGACAAAATCAGAAAC
NONE
Os.35273.2.S1_at--972--9351NONE
TCGACAAAATCAGAAACTACATGCT
NONE
Os.35273.2.S1_at--577--2531Chr07:17135557..17135581 (25 bp)
AACTACATGCTGTTCAGACCTTCAA
NONE
Os.35273.2.S1_at--349--9871Chr07:17135560..17135584 (25 bp)
TACATGCTGTTCAGACCTTCAAACA
NONE
Os.35273.2.S1_at--1055--611Chr07:17135563..17135587 (25 bp)
ATGCTGTTCAGACCTTCAAACATTT
NONE
Os.35273.2.S1_at--399--6751Chr07:17135568..17135592 (25 bp)
GTTCAGACCTTCAAACATTTTCAGC
NONE
Os.35273.2.S1_at--93--5851Chr07:17135573..17135597 (25 bp)
GACCTTCAAACATTTTCAGCAACAT
NONE
Os.35273.2.S1_at--1159--9691Chr07:17135578..17135602 (25 bp)
TCAAACATTTTCAGCAACATCAGGA
NONE
Os.35273.2.S1_at--894--2491Chr07:17135581..17135605 (25 bp)
AACATTTTCAGCAACATCAGGAATG
NONE
Os.35273.2.S1_at--512--101733Chr11:27399666..27399967 (25 bp)
TATAGTCATTAATCGTCGTTCACGG
NONE
Os.35273.2.S1_at--630--100325Chr11:27394237..27394538 (25 bp)
TAGTCATTAATCGTCGTTCACGGCA
NONE
Target Sequence 
GAACTTCCTCGACAAAATCAGAAACTACATGCTGTTCAGACCTTCAAACATTTTCAGCAACATCAGGAATGTTGGAAATA
TAGTCATTAATCGTCGTTCACGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35273.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis