Browse Element(s) Details


Os.5242.1.S1_at

Description gb:AF200467.1
DB_XREF= gi:9957713
TID=Os.5242.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5242 (NCBI UniGene Cluster)
DEF=Oryza sativa subtilase mRNA, complete cds.
PROD=subtilase
FL= gb:AF200467.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5826011/11Subtilisin N-terminal Region family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g58194Os.42305.2.S1_x_at11/111+33968802..33977777protein disulfide isomerase, putative, expressed
LOC_Os01g58194Os.8427.1.S1_s_at11/111+33968802..33977777protein disulfide isomerase, putative, expressed
LOC_Os01g58194Os.42305.1.S1_s_at11/111+33968802..33977777protein disulfide isomerase, putative, expressed
LOC_Os01g58194Os.35273.2.S1_at2/111+33968802..33977777protein disulfide isomerase, putative, expressed
LOC_Os01g58194Os.35273.2.S1_x_at1/111+33968802..33977777protein disulfide isomerase, putative, expressed
LOC_Os01g58220Os.38804.1.S1_at10/111+33977992..33982027Protein translation factor SUI1 homolog, putative, expressed
LOC_Os01g58220OsAffx.10645.5.S1_x_at9/111+33977992..33982027Protein translation factor SUI1 homolog, putative, expressed
LOC_Os01g58220Os.52686.1.S1_at2/111+33977992..33982027Protein translation factor SUI1 homolog, putative, expressed
LOC_Os01g58230OsAffx.25270.2.S1_x_at4/111+33982822..33985050hypothetical protein
LOC_Os01g58230OsAffx.5723.1.S1_x_at4/111+33982822..33985050hypothetical protein
LOC_Os01g58230OsAffx.25270.2.S1_at3/111+33982822..33985050hypothetical protein
LOC_Os01g58230OsAffx.1248.1.S1_x_at1/111+33982822..33985050hypothetical protein
LOC_Os01g58240Os.30258.1.S1_at11/111+33986630..33990388Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58240Os.30258.2.S1_x_at10/111+33986630..33990388Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58260Os.5242.1.S1_at11/111+33994877..33999386Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58260Os.30258.2.S1_x_at1/111+33994877..33999386Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58270OsAffx.23836.1.S1_at11/111+34001253..34006565Subtilisin N-terminal Region family protein
LOC_Os01g58280Os.35642.2.S1_x_at11/111+34010031..34015042Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58280Os.48715.1.A1_x_at4/111+34010031..34015042Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58280Os.5139.2.S1_at1/111+34010031..34015042Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58280Os.5139.2.S1_x_at1/111+34010031..34015042Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58290Os.28433.5.S1_x_at11/111+34018642..34023374Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58290Os.28433.4.A1_at10/111+34018642..34023374Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58300OsAffx.26617.1.S1_at10/111+34023403..34024850hypothetical protein
LOC_Os01g58300OsAffx.26617.4.S1_x_at4/111+34023403..34024850hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004289molecular_functionsubtilase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5242.1.S1_at--1006--6651Chr01:33999093..33999117 (25 bp)
GTTGCATAACCTGGGCAAAACATGC
LOC_Os01g58260
Os.5242.1.S1_at--1145--631Chr01:33999114..33999138 (25 bp)
ATGCAGGCAATAACACAGTGCTCTT
LOC_Os01g58260
Os.5242.1.S1_at--470--2471Chr01:33999125..33999149 (25 bp)
AACACAGTGCTCTTAGAGGCAATAG
LOC_Os01g58260
Os.5242.1.S1_at--439--10291Chr01:33999172..33999196 (25 bp)
TTTCCACAGAGATATGGTTGCTTGT
LOC_Os01g58260
Os.5242.1.S1_at--228--6671Chr01:33999188..33999212 (25 bp)
GTTGCTTGTAAATACTTATCACCAG
LOC_Os01g58260
Os.5242.1.S1_at--724--2971Chr01:33999216..33999240 (25 bp)
AATGAGTTAATGACCGGCCAATGTT
LOC_Os01g58260
Os.5242.1.S1_at--586--1771Chr01:33999228..33999252 (25 bp)
ACCGGCCAATGTTGACTGGTCAATG
LOC_Os01g58260
Os.5242.1.S1_at--887--6871Chr01:33999252..33999276 (25 bp)
GTATTTCATTTCTATCACGTATCTG
LOC_Os01g58260
Os.5242.1.S1_at--63--9691Chr01:33999266..33999290 (25 bp)
TCACGTATCTGATTATCACTTCGAT
LOC_Os01g58260
Os.5242.1.S1_at--925--9671Chr01:33999281..33999305 (25 bp)
TCACTTCGATGGATGGTCAATTTCA
LOC_Os01g58260
Os.5242.1.S1_at--702--8791Chr01:33999334..33999358 (25 bp)
TGTTCAGGTCTATGTCATGCCATGT
LOC_Os01g58260
Target Sequence 
GTTGCATAACCTGGGCAAAACATGCAGGCAATAACACAGTGCTCTTAGAGGCAATAGAGCAAAATACAGGATATACCAAT
TTCCACAGAGATATGGTTGCTTGTAAATACTTATCACCAGAATAATGAGTTAATGACCGGCCAATGTTGACTGGTCAATG
TATTTCATTTCTATCACGTATCTGATTATCACTTCGATGGATGGTCAATTTCATACCATGTTGGTTACAGAAATACAAAA
ATGTTCAGGTCTATGTCATGCCATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5242.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis