Browse Element(s) Details


Os.38804.1.S1_at

Description gb:BI806764
DB_XREF= gi:15853968
DB_XREF=S077C03
CLONE=S077C03
TID=Os.38804.1
CNT=20
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.38804 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative translation initiation factor SUI1 (P0684C02.16), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5822010/11Protein translation factor SUI1 homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g58150Os.36901.1.S1_at11/111+33956407..33957868expressed protein
LOC_Os01g58160Os.27541.1.A1_at2/111+33960068..33962191hypothetical protein
LOC_Os01g58160OsAffx.1396.1.S1_x_at1/111+33960068..33962191hypothetical protein
LOC_Os01g58170OsAffx.23834.1.S1_at10/111+33965457..33966349hypothetical protein
LOC_Os01g58194Os.42305.2.S1_x_at11/111+33968802..33977777protein disulfide isomerase, putative, expressed
LOC_Os01g58194Os.8427.1.S1_s_at11/111+33968802..33977777protein disulfide isomerase, putative, expressed
LOC_Os01g58194Os.42305.1.S1_s_at11/111+33968802..33977777protein disulfide isomerase, putative, expressed
LOC_Os01g58194Os.35273.2.S1_at2/111+33968802..33977777protein disulfide isomerase, putative, expressed
LOC_Os01g58194Os.35273.2.S1_x_at1/111+33968802..33977777protein disulfide isomerase, putative, expressed
LOC_Os01g58220Os.38804.1.S1_at10/111+33977992..33982027Protein translation factor SUI1 homolog, putative, expressed
LOC_Os01g58220OsAffx.10645.5.S1_x_at9/111+33977992..33982027Protein translation factor SUI1 homolog, putative, expressed
LOC_Os01g58220Os.52686.1.S1_at2/111+33977992..33982027Protein translation factor SUI1 homolog, putative, expressed
LOC_Os01g58230OsAffx.25270.2.S1_x_at4/111+33982822..33985050hypothetical protein
LOC_Os01g58230OsAffx.5723.1.S1_x_at4/111+33982822..33985050hypothetical protein
LOC_Os01g58230OsAffx.25270.2.S1_at3/111+33982822..33985050hypothetical protein
LOC_Os01g58230OsAffx.1248.1.S1_x_at1/111+33982822..33985050hypothetical protein
LOC_Os01g58240Os.30258.1.S1_at11/111+33986630..33990388Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58240Os.30258.2.S1_x_at10/111+33986630..33990388Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58260Os.5242.1.S1_at11/111+33994877..33999386Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58260Os.30258.2.S1_x_at1/111+33994877..33999386Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58270OsAffx.23836.1.S1_at11/111+34001253..34006565Subtilisin N-terminal Region family protein

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Gene Ontology Classification
GO idTypeName
GO:0006413biological_processtranslational initiation
GO:0003743molecular_functiontranslation initiation factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38804.1.S1_at--115--1911Chr01:33979026..33979049 (24 bp)
ACGTCCAGCTTCCATCAGCTTTTGA
LOC_Os01g58220
Os.38804.1.S1_at--1160--391NONE
ATCAGCTTTTGATCCGTTTGCGGAA
NONE
Os.38804.1.S1_at--944--6371Chr01:33978693..33978717 (25 bp)
GATCCGTTTGCGGAAGCCAATGCTG
LOC_Os01g58220
Os.38804.1.S1_at--114--9711Chr01:33978645..33978669 (25 bp)
TCAAAGGACTATGTACACGTGCGCA
LOC_Os01g58220
Os.38804.1.S1_at--671--3691Chr01:33978637..33978661 (25 bp)
CTATGTACACGTGCGCATTCAGCAG
LOC_Os01g58220
Os.38804.1.S1_at--515--8211Chr01:33978529..33978553 (25 bp)
GGAATTCTGTTGTAATGGTACTGTA
LOC_Os01g58220
Os.38804.1.S1_at--718--9211Chr01:33978404..33978520 (25 bp)
TCCAGAGTTAGGCCAGGTCATTCAA
LOC_Os01g58220
Os.38804.1.S1_at--33--4311Chr01:33978267..33978368 (25 bp)
CCTAGTTCAGGCTGGAATTGTAAAG
LOC_Os01g58220
Os.38804.1.S1_at--154--2791Chr01:33978241..33978265 (25 bp)
AAGAGAGCATCAAAATACACGGGTT
LOC_Os01g58220
Os.38804.1.S1_at--236--3091Chr01:33978228..33978252 (25 bp)
AATACACGGGTTTTAGGCTACACAT
LOC_Os01g58220
Os.38804.1.S1_at--674--8311Chr01:33978213..33978237 (25 bp)
GGCTACACATAATGCCTATGTGCTA
LOC_Os01g58220
Target Sequence 
ACGTCCAGCTTCCATCAGCTTTTGATCCGTTTGCGGAAGCCAATGCTGAGGACTCCAGCGTTGGTGCTGGATCAAAGGAC
TATGTACACGTGCGCATTCAGCAGCGCAACGGAAGAAAGAGTCTGACTACTGTTCAGGGCTTGAAGAAAGAGTACAGTTA
CAACAAAATCCTCAAGGATCTGAAAAAGGAATTCTGTTGTAATGGTACTGTAGTCCAAGATCCAGAGTTAGGCCAGGTCA
TTCAACTTCAAGGTGATCAGCGTAAAAATGTTGCGACGTTCCTAGTTCAGGCTGGAATTGTAAAGAAAGAGAGCATCAAA
ATACACGGGTTTTAGGCTACACATAATGCCTATGTGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38804.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis