Browse Element(s) Details


OsAffx.1248.1.S1_x_at

Description gb:NM_188725.1
DB_XREF= gi:34904533
GEN=B1066G12.12
TID=OsAffx.1248.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1066G12.12 (B1066G12.12), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g582301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g58150Os.36901.1.S1_at11/111+33956407..33957868expressed protein
LOC_Os01g58160Os.27541.1.A1_at2/111+33960068..33962191hypothetical protein
LOC_Os01g58160OsAffx.1396.1.S1_x_at1/111+33960068..33962191hypothetical protein
LOC_Os01g58170OsAffx.23834.1.S1_at10/111+33965457..33966349hypothetical protein
LOC_Os01g58194Os.42305.2.S1_x_at11/111+33968802..33977777protein disulfide isomerase, putative, expressed
LOC_Os01g58194Os.8427.1.S1_s_at11/111+33968802..33977777protein disulfide isomerase, putative, expressed
LOC_Os01g58194Os.42305.1.S1_s_at11/111+33968802..33977777protein disulfide isomerase, putative, expressed
LOC_Os01g58194Os.35273.2.S1_at2/111+33968802..33977777protein disulfide isomerase, putative, expressed
LOC_Os01g58194Os.35273.2.S1_x_at1/111+33968802..33977777protein disulfide isomerase, putative, expressed
LOC_Os01g58220Os.38804.1.S1_at10/111+33977992..33982027Protein translation factor SUI1 homolog, putative, expressed
LOC_Os01g58220OsAffx.10645.5.S1_x_at9/111+33977992..33982027Protein translation factor SUI1 homolog, putative, expressed
LOC_Os01g58220Os.52686.1.S1_at2/111+33977992..33982027Protein translation factor SUI1 homolog, putative, expressed
LOC_Os01g58230OsAffx.25270.2.S1_x_at4/111+33982822..33985050hypothetical protein
LOC_Os01g58230OsAffx.5723.1.S1_x_at4/111+33982822..33985050hypothetical protein
LOC_Os01g58230OsAffx.25270.2.S1_at3/111+33982822..33985050hypothetical protein
LOC_Os01g58230OsAffx.1248.1.S1_x_at1/111+33982822..33985050hypothetical protein
LOC_Os01g58240Os.30258.1.S1_at11/111+33986630..33990388Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58240Os.30258.2.S1_x_at10/111+33986630..33990388Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58260Os.5242.1.S1_at11/111+33994877..33999386Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58260Os.30258.2.S1_x_at1/111+33994877..33999386Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58270OsAffx.23836.1.S1_at11/111+34001253..34006565Subtilisin N-terminal Region family protein
LOC_Os01g58280Os.35642.2.S1_x_at11/111+34010031..34015042Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58280Os.48715.1.A1_x_at4/111+34010031..34015042Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58280Os.5139.2.S1_at1/111+34010031..34015042Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58280Os.5139.2.S1_x_at1/111+34010031..34015042Subtilisin N-terminal Region family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1248.1.S1_x_at--681--9091Chr01:7869287..7869311 (25 bp)
TGCTCGGTGTTTCGTTCTGCTCGCT
NONE
OsAffx.1248.1.S1_x_at--560--9431Chr01:7869290..7869314 (25 bp)
TCGGTGTTTCGTTCTGCTCGCTGCG
NONE
OsAffx.1248.1.S1_x_at--476--7411Chr01:7869293..7869317 (25 bp)
GTGTTTCGTTCTGCTCGCTGCGCTT
NONE
OsAffx.1248.1.S1_x_at--921--3791Chr01:7869306..7869330 (25 bp)
CTCGCTGCGCTTCTAGTTGAGCAAT
NONE
OsAffx.1248.1.S1_x_at--973--4771Chr01:7869309..7869333 (25 bp)
GCTGCGCTTCTAGTTGAGCAATCCT
NONE
OsAffx.1248.1.S1_x_at--978--9532Chr12:24890266..24890290 (25 bp)
TCTAGTTGAGCAATCCTCTTCAATC
NONE
OsAffx.1248.1.S1_x_at--11--9571Chr01:7869333..7869357 (25 bp)
TCTTCAATCTATGGGAGGCGGCGCG
NONE
OsAffx.1248.1.S1_x_at--1106--9711Chr01:7869336..7869360 (25 bp)
TCAATCTATGGGAGGCGGCGCGGGT
NONE
OsAffx.1248.1.S1_x_at--395--4031Chr01:7869609..7869633 (25 bp)
CGTAGCCGTGCATCGCCCCGAGAGA
NONE
OsAffx.1248.1.S1_x_at--212--6591Chr01:7869638..7869662 (25 bp)
GATTGAAGAGAACCGTATGACAGGT
NONE
OsAffx.1248.1.S1_x_at--90--7758Chr11:1639774..1639799 (25 bp)
GGTGGGTCCCACAATTTTATATATA
NONE
Target Sequence 
TGCTCGGTGTTTCGTTCTGCTCGCTGCGCTTCTAGTTGAGCAATCCTCTTCAATCTATGGGAGGCGGCGCGGGTGCGCGG
GGGCGGCGACGGCGTCGTCTAGGCCGAGCGGCGACGCGGCGGCAACACCACCACCGGCGGCACGTCCGCCGCCCTCAGCC
GCCGCCCCCGCCGCCCTCAGCCGCCGCCTCCGCGCCGCCGCCCTCAGCCCCCACCTCCGCCACCGCCGCCCACCGACCGT
CAGCCCCCGCGCACCCGCGCCGCCCGTCCGCCCCCGCACACCGCCGCTCGCCGCCACCCGCGCCCGCCGTTCCTGCTCGC
CCCGTAGCCGTGCATCGCCCCGAGAGAGAGAGATTGAAGAGAACCGTATGACAGGTGGGTCCCACAATTTTATATATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1248.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis