Browse Element(s) Details


Os.8427.1.S1_s_at

Description gb:CR288139
DB_XREF= gi:44674705
DB_XREF=CR288139
CLONE=y688b02p3
TID=Os.8427.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.8427 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0684C02.12 (P0684C02.12), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5819411/11protein disulfide isomerase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g58130Os.6683.1.S1_at11/111+33945219..33946022expressed protein
LOC_Os01g58140Os.7983.1.S1_at11/111+33952135..33952891expressed protein
LOC_Os01g58150Os.36901.1.S1_at11/111+33956407..33957868expressed protein
LOC_Os01g58160Os.27541.1.A1_at2/111+33960068..33962191hypothetical protein
LOC_Os01g58160OsAffx.1396.1.S1_x_at1/111+33960068..33962191hypothetical protein
LOC_Os01g58170OsAffx.23834.1.S1_at10/111+33965457..33966349hypothetical protein
LOC_Os01g58194Os.42305.2.S1_x_at11/111+33968802..33977777protein disulfide isomerase, putative, expressed
LOC_Os01g58194Os.8427.1.S1_s_at11/111+33968802..33977777protein disulfide isomerase, putative, expressed
LOC_Os01g58194Os.42305.1.S1_s_at11/111+33968802..33977777protein disulfide isomerase, putative, expressed
LOC_Os01g58194Os.35273.2.S1_at2/111+33968802..33977777protein disulfide isomerase, putative, expressed
LOC_Os01g58194Os.35273.2.S1_x_at1/111+33968802..33977777protein disulfide isomerase, putative, expressed
LOC_Os01g58220Os.38804.1.S1_at10/111+33977992..33982027Protein translation factor SUI1 homolog, putative, expressed
LOC_Os01g58220OsAffx.10645.5.S1_x_at9/111+33977992..33982027Protein translation factor SUI1 homolog, putative, expressed
LOC_Os01g58220Os.52686.1.S1_at2/111+33977992..33982027Protein translation factor SUI1 homolog, putative, expressed
LOC_Os01g58230OsAffx.25270.2.S1_x_at4/111+33982822..33985050hypothetical protein
LOC_Os01g58230OsAffx.5723.1.S1_x_at4/111+33982822..33985050hypothetical protein
LOC_Os01g58230OsAffx.25270.2.S1_at3/111+33982822..33985050hypothetical protein
LOC_Os01g58230OsAffx.1248.1.S1_x_at1/111+33982822..33985050hypothetical protein
LOC_Os01g58240Os.30258.1.S1_at11/111+33986630..33990388Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58240Os.30258.2.S1_x_at10/111+33986630..33990388Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58260Os.5242.1.S1_at11/111+33994877..33999386Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58260Os.30258.2.S1_x_at1/111+33994877..33999386Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58270OsAffx.23836.1.S1_at11/111+34001253..34006565Subtilisin N-terminal Region family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8427.1.S1_s_at--182--5951Chr01:33968899..33968923 (25 bp)
GAGCACACAGGGAAAGCGCCGAGAA
LOC_Os01g58194
Os.8427.1.S1_s_at--723--2651Chr01:33968912..33968936 (25 bp)
AAGCGCCGAGAAGAATAGTGGACAT
LOC_Os01g58194
Os.8427.1.S1_s_at--693--9451Chr01:33968981..33969005 (25 bp)
TCGGCGGCTCTGTGCTGCCTCTGGC
LOC_Os01g58194
Os.8427.1.S1_s_at--158--9091Chr01:33969035..33969059 (25 bp)
TGCTCGTCCCGTTCATGCTTTGTTT
LOC_Os01g58194
Os.8427.1.S1_s_at--902--4871Chr01:33969051..33969075 (25 bp)
GCTTTGTTTCTGATTCTCTACTCGA
LOC_Os01g58194
Os.8427.1.S1_s_at--183--8831Chr01:33969061..33969085 (25 bp)
TGATTCTCTACTCGATCGGTTCTTG
LOC_Os01g58194
Os.8427.1.S1_s_at--658--9871Chr01:33969069..33969093 (25 bp)
TACTCGATCGGTTCTTGTCGGTTAA
LOC_Os01g58194
Os.8427.1.S1_s_at--359--7191Chr01:33969085..33969109 (25 bp)
GTCGGTTAAACTTGCTTGCTGTTCT
LOC_Os01g58194
Os.8427.1.S1_s_at--610--7511Chr01:33969183..33969207 (25 bp)
GTGGATTTGAACATGCTAGGCTGGA
LOC_Os01g58194
Os.8427.1.S1_s_at--1090--2491Chr01:33969192..33969216 (25 bp)
AACATGCTAGGCTGGATATAAATCA
LOC_Os01g58194
Os.8427.1.S1_s_at--479--7711Chr01:33969220..33969244 (25 bp)
GGGTGAATTGATCTGATATTACGAA
LOC_Os01g58194
Target Sequence 
GAGCACACAGGGAAAGCGCCGAGAAGAATAGTGGACATGGGACGGGAGCCGGAGATGGAGGAAGCACGGGAGAATGGGGG
CGTCGGCGGCTCTGTGCTGCCTCTGGCCTCGCTCATCTCTCCAACTGGGANCGAGNTGCTCGTCCCGTTCATGCTTTGTT
TCTGATTCTCTACTCGATCGGTTCTTGTCGGTTAAACTTGCTTGCTGTTCTCCGGTTTAAGATGTTATCCAGGCTTGTAC
TTGCAAGCGACATAAGCACATCTTGATTTCTGGGGTGGATTTGAACATGCTAGGCTGGATATAAATCAATGCGGGGTGAA
TTGATCTGATATTACGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8427.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis