Browse Element(s) Details


Os.7983.1.S1_at

Description gb:AK062811.1
DB_XREF= gi:32972829
TID=Os.7983.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7983 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0684C02.9 (P0684C02.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-107-E01, full insert sequence.
FL= gb:AK062811.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5814011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g58100OsAffx.9503.1.S1_at11/111+33928178..33932108Common central domain of tyrosinase family protein
LOC_Os01g58114Os.10123.2.S1_x_at10/111+33936195..33943176expressed protein
LOC_Os01g58114Os.10123.1.S1_at10/111+33936195..33943176expressed protein
LOC_Os01g58114OsAffx.21000.1.S1_at1/111+33936195..33943176expressed protein
LOC_Os01g58130Os.6683.1.S1_at11/111+33945219..33946022expressed protein
LOC_Os01g58140Os.7983.1.S1_at11/111+33952135..33952891expressed protein
LOC_Os01g58150Os.36901.1.S1_at11/111+33956407..33957868expressed protein
LOC_Os01g58160Os.27541.1.A1_at2/111+33960068..33962191hypothetical protein
LOC_Os01g58160OsAffx.1396.1.S1_x_at1/111+33960068..33962191hypothetical protein
LOC_Os01g58170OsAffx.23834.1.S1_at10/111+33965457..33966349hypothetical protein
LOC_Os01g58194Os.42305.2.S1_x_at11/111+33968802..33977777protein disulfide isomerase, putative, expressed
LOC_Os01g58194Os.8427.1.S1_s_at11/111+33968802..33977777protein disulfide isomerase, putative, expressed
LOC_Os01g58194Os.42305.1.S1_s_at11/111+33968802..33977777protein disulfide isomerase, putative, expressed
LOC_Os01g58194Os.35273.2.S1_at2/111+33968802..33977777protein disulfide isomerase, putative, expressed
LOC_Os01g58194Os.35273.2.S1_x_at1/111+33968802..33977777protein disulfide isomerase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7983.1.S1_at--140--1311Chr01:33952498..33952522 (25 bp)
AGATGATCAGCTCCGGCAAGGTTTG
LOC_Os01g58140
Os.7983.1.S1_at--811--1771Chr01:33952428..33952452 (25 bp)
ACCGGAGGCCGACGAGTCATAGATT
LOC_Os01g58140
Os.7983.1.S1_at--944--7951Chr01:33952396..33952420 (25 bp)
GGATCTTTTGATTCCATAGGACTGT
LOC_Os01g58140
Os.7983.1.S1_at--867--6691Chr01:33952366..33952390 (25 bp)
GTTCCTTGATTGATTCTCCACATGT
LOC_Os01g58140
Os.7983.1.S1_at--1119--3811Chr01:33952351..33952375 (25 bp)
CTCCACATGTGTATAGTTGCTCTAG
LOC_Os01g58140
Os.7983.1.S1_at--264--1211Chr01:33952311..33952335 (25 bp)
AGTTTGATCGTCATTCTTTCGGAGA
LOC_Os01g58140
Os.7983.1.S1_at--401--6531Chr01:33952230..33952254 (25 bp)
GATTTCTGATATAGCTCTGTCCCTG
LOC_Os01g58140
Os.7983.1.S1_at--1107--291Chr01:33952220..33952244 (25 bp)
ATAGCTCTGTCCCTGAACTTTGTAC
LOC_Os01g58140
Os.7983.1.S1_at--611--5471Chr01:33952206..33952230 (25 bp)
GAACTTTGTACTCATATGGCCTCAG
LOC_Os01g58140
Os.7983.1.S1_at--977--871Chr01:33952191..33952215 (25 bp)
ATGGCCTCAGATGTCTCGATGATCA
LOC_Os01g58140
Os.7983.1.S1_at--621--5991Chr01:33952151..33952175 (25 bp)
GAGACGATGAACTTCACAGCTAGTA
LOC_Os01g58140
Target Sequence 
AGATGATCAGCTCCGGCAAGGTTTGCTACGAGCAGGAGGCAGCGGGCTGGCGGCCGTCGCTGCAAAGCATNACCGGAGGC
CGACGAGTCATAGATTATTCAGTGGATCTTTTGATTCCATAGGACTGTTTTATGTTCCTTGATTGATTCTCCACATGTGT
ATAGTTGCTCTAGCTAGGAAGATATTGTAGTTTGATCGTCATTCTTTCGGAGATGTACAGGCTACGAGACTGATTGAGAG
AGATTGCTGGAACTTTTTTTACTTGAGCAGATTTCTGATATAGCTCTGTCCCTGAACTTTGTACTCATATGGCCTCAGAT
GTCTCGATGATCACTGATGAACTGCAGAGAGACGATGAACTTCACAGCTAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7983.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis