Browse Element(s) Details


Os.10123.1.S1_at

Description gb:AK101086.1
DB_XREF= gi:32986295
TID=Os.10123.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10123 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0684C02.5 (P0684C02.5), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033024J15, full insert sequence.
FL= gb:AK101086.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5811410/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g58060OsAffx.32320.1.S1_at11/111+33908098..33916953hypothetical protein
LOC_Os01g58060OsAffx.24369.1.S2_at11/111+33908098..33916953hypothetical protein
LOC_Os01g58060OsAffx.24407.2.S1_s_at11/111+33908098..33916953hypothetical protein
LOC_Os01g58060Os.27314.1.S1_at11/111+33908098..33916953hypothetical protein
LOC_Os01g58060OsAffx.24407.1.S1_at9/111+33908098..33916953hypothetical protein
LOC_Os01g58070OsAffx.2355.1.S1_at11/111+33917484..33918509Common central domain of tyrosinase family protein
LOC_Os01g58080Os.4953.2.S1_x_at11/111+33920592..33924187membrane-associated salt-inducible protein, putative, expressed
LOC_Os01g58080Os.4953.1.S1_at11/111+33920592..33924187membrane-associated salt-inducible protein, putative, expressed
LOC_Os01g58100OsAffx.9503.1.S1_at11/111+33928178..33932108Common central domain of tyrosinase family protein
LOC_Os01g58114Os.10123.2.S1_x_at10/111+33936195..33943176expressed protein
LOC_Os01g58114Os.10123.1.S1_at10/111+33936195..33943176expressed protein
LOC_Os01g58114OsAffx.21000.1.S1_at1/111+33936195..33943176expressed protein
LOC_Os01g58130Os.6683.1.S1_at11/111+33945219..33946022expressed protein
LOC_Os01g58140Os.7983.1.S1_at11/111+33952135..33952891expressed protein
LOC_Os01g58150Os.36901.1.S1_at11/111+33956407..33957868expressed protein
LOC_Os01g58160Os.27541.1.A1_at2/111+33960068..33962191hypothetical protein
LOC_Os01g58160OsAffx.1396.1.S1_x_at1/111+33960068..33962191hypothetical protein
LOC_Os01g58170OsAffx.23834.1.S1_at10/111+33965457..33966349hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10123.1.S1_at--1067--4591Chr01:33936509..33936533 (25 bp)
GCGAAATTGCTGATCTGTTACACAT
LOC_Os01g58114
Os.10123.1.S1_at--500--6771Chr01:33936493..33936517 (25 bp)
GTTACACATTATTACGCCTTGCATT
LOC_Os01g58114
Os.10123.1.S1_at--17--10131Chr01:33936462..33936486 (25 bp)
TATGCTGGCTTTTAGTCTGTACTTT
LOC_Os01g58114
Os.10123.1.S1_at--184--2051Chr01:33936442..33936466 (25 bp)
ACTTTAGCTGTACATATCACTGTAG
LOC_Os01g58114
Os.10123.1.S1_at--290--391Chr01:33936427..33936451 (25 bp)
ATCACTGTAGTCTGTAGGTATGCAA
LOC_Os01g58114
Os.10123.1.S1_at--1116--10371Chr01:33936399..33936423 (25 bp)
TTTTCTTTGTTGTTACTACGAAGCA
LOC_Os01g58114
Os.10123.1.S1_at--516--1851Chr01:33936382..33936406 (25 bp)
ACGAAGCAACTTCCGCAAATAAGGA
LOC_Os01g58114
Os.10123.1.S1_at--721--1171Chr01:33936334..33936358 (25 bp)
AGTAAATCTCTACCCTTGATGCTAC
LOC_Os01g58114
Os.10123.1.S1_at--839--9951Chr01:33936324..33936348 (25 bp)
TACCCTTGATGCTACAGGTGTTACA
LOC_Os01g58114
Os.10123.1.S1_at--438--1051Chr01:33936309..33936333 (25 bp)
AGGTGTTACACTGCTGTAGGGTTCA
LOC_Os01g58114
Os.10123.1.S1_at--1042--1391Chr01:33936193..33936217 (25 bp)
AGACTGAATGACTCATGCTAGCTAA
NONE
Target Sequence 
GCGAAATTGCTGATCTGTTACACATTATTACGCCTTGCATTTTGATATATGCTGGCTTTTAGTCTGTACTTTAGCTGTAC
ATATCACTGTAGTCTGTAGGTATGCAATTGTTTTCTTTGTTGTTACTACGAAGCAACTTCCGCAAATAAGGAAGATTATG
ATTGCGTGAATGTACAGTAAATCTCTACCCTTGATGCTACAGGTGTTACACTGCTGTAGGGTTCANATAACTTTCGTCAT
ATAGTAATTGACAAATACATGTAGAAAATGTATGTACTTTGTTGTATTGAAAATTTGAAATCTGATCGTAAACAAAAGAC
TGAATGACTCATGCTAGCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10123.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis