Browse Element(s) Details


OsAffx.2355.1.S1_at

Description tigr:9629.m05694
TID=OsAffx.2355.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Common central domain of tyrosinase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5807011/11Common central domain of tyrosinase family protein
LOC_Os01g579601/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g58040OsAffx.30473.1.S1_x_at11/111+33894503..33896937Photosystem II D2 protein, putative, expressed
LOC_Os01g58040OsAffx.30473.2.S1_x_at9/111+33894503..33896937Photosystem II D2 protein, putative, expressed
LOC_Os01g58060OsAffx.32320.1.S1_at11/111+33908098..33916953hypothetical protein
LOC_Os01g58060OsAffx.24369.1.S2_at11/111+33908098..33916953hypothetical protein
LOC_Os01g58060OsAffx.24407.2.S1_s_at11/111+33908098..33916953hypothetical protein
LOC_Os01g58060Os.27314.1.S1_at11/111+33908098..33916953hypothetical protein
LOC_Os01g58060OsAffx.24407.1.S1_at9/111+33908098..33916953hypothetical protein
LOC_Os01g58070OsAffx.2355.1.S1_at11/111+33917484..33918509Common central domain of tyrosinase family protein
LOC_Os01g58080Os.4953.2.S1_x_at11/111+33920592..33924187membrane-associated salt-inducible protein, putative, expressed
LOC_Os01g58080Os.4953.1.S1_at11/111+33920592..33924187membrane-associated salt-inducible protein, putative, expressed
LOC_Os01g58100OsAffx.9503.1.S1_at11/111+33928178..33932108Common central domain of tyrosinase family protein
LOC_Os01g58114Os.10123.2.S1_x_at10/111+33936195..33943176expressed protein
LOC_Os01g58114Os.10123.1.S1_at10/111+33936195..33943176expressed protein
LOC_Os01g58114OsAffx.21000.1.S1_at1/111+33936195..33943176expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2355.1.S1_at--862--8791Chr01:33917896..33917920 (25 bp)
TGTTCATGCCGTTCCATAGGTGCTA
LOC_Os01g58070
OsAffx.2355.1.S1_at--120--291Chr01:33917881..33917905 (25 bp)
ATAGGTGCTATCTCTACTTCTTCGA
LOC_Os01g58070
OsAffx.2355.1.S1_at--442--8071Chr01:33917845..33917869 (25 bp)
GGAGCTTGATCGGTGATCCCACCTT
LOC_Os01g58070
OsAffx.2355.1.S1_at--59--5411Chr01:33917706..33917730 (25 bp)
GAAGCTGATCGATCTGGACTACAAT
LOC_Os01g58070
OsAffx.2355.1.S1_at--587--3191Chr01:33917685..33917709 (25 bp)
CAATGGGAGGGAGCCACGGTTCACC
LOC_Os01g58070
OsAffx.2355.1.S1_at--606--6651Chr01:33917648..33917672 (25 bp)
GTTGATCACAACCTACGTGTCATGT
LOC_Os01g58070
OsAffx.2355.1.S1_at--958--9931Chr01:33917635..33917659 (25 bp)
TACGTGTCATGTACCGCCAGGTATA
LOC_Os01g58070
OsAffx.2355.1.S1_at--640--791Chr01:33917611..33917635 (25 bp)
ATGTGTGTGCAATGCGTGCATCGAT
LOC_Os01g58070
OsAffx.2355.1.S1_at--286--6311Chr01:33917589..33917613 (25 bp)
GATGCAGCGCGTCTCTACGAAATTG
LOC_Os01g58070
OsAffx.2355.1.S1_at--995--3711Chr01:33917575..33917599 (25 bp)
CTACGAAATTGTCAGGTGCCTACCT
LOC_Os01g58070
OsAffx.2355.1.S1_at--650--1032Chr01:33835489..33835513 (25 bp)
AGGTGCCTACCTGACATGGCTGTTC
LOC_Os01g57960
Target Sequence 
TGTTCATGCCGTTCCATAGGTGCTATCTCTACTTCTTCGAGCGGATCCTGGGGAGCTTGATCGGTGATCCCACCTTCGCC
ATACCGTTCTGGAACTGGGATGCACCGGACGGGATGAGAATGCCGGCGATGTACACCGACCAGTCCTCACCGTTGTTCGA
TCCCCGGCGGAACGGGCGGCACGTGCCGCCGAAGCTGATCGATCTGGACTACAATGGGAGGGAGCCACGGTTCACCGACA
ACCAACAGGTTGATCACAACCTACGTGTCATGTACCGCCAGGTATATGTGTGTGCAATGCGTGCATCGATGCAGCGCGTC
TCTACGAAATTGTCAGGTGCCTACCTGACATGGCTGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2355.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis