Browse Element(s) Details


OsAffx.24407.1.S1_at

Description tigr:9629.m05693
TID=OsAffx.24407.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to NADH dehydrogenase ND2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g580609/11hypothetical protein
LOC_Os10g280203/11prolyl oligopeptidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g58030OsAffx.26050.13.S1_x_at9/111+33887116..33887652NAD, putative, expressed
LOC_Os01g58040OsAffx.30473.1.S1_x_at11/111+33894503..33896937Photosystem II D2 protein, putative, expressed
LOC_Os01g58040OsAffx.30473.2.S1_x_at9/111+33894503..33896937Photosystem II D2 protein, putative, expressed
LOC_Os01g58060OsAffx.32320.1.S1_at11/111+33908098..33916953hypothetical protein
LOC_Os01g58060OsAffx.24369.1.S2_at11/111+33908098..33916953hypothetical protein
LOC_Os01g58060OsAffx.24407.2.S1_s_at11/111+33908098..33916953hypothetical protein
LOC_Os01g58060Os.27314.1.S1_at11/111+33908098..33916953hypothetical protein
LOC_Os01g58060OsAffx.24407.1.S1_at9/111+33908098..33916953hypothetical protein
LOC_Os01g58070OsAffx.2355.1.S1_at11/111+33917484..33918509Common central domain of tyrosinase family protein
LOC_Os01g58080Os.4953.2.S1_x_at11/111+33920592..33924187membrane-associated salt-inducible protein, putative, expressed
LOC_Os01g58080Os.4953.1.S1_at11/111+33920592..33924187membrane-associated salt-inducible protein, putative, expressed
LOC_Os01g58100OsAffx.9503.1.S1_at11/111+33928178..33932108Common central domain of tyrosinase family protein
LOC_Os01g58114Os.10123.2.S1_x_at10/111+33936195..33943176expressed protein
LOC_Os01g58114Os.10123.1.S1_at10/111+33936195..33943176expressed protein
LOC_Os01g58114OsAffx.21000.1.S1_at1/111+33936195..33943176expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0045333biological_processcellular respiration
GO:0005739cellular_componentmitochondrion
GO:0003954molecular_functionNADH dehydrogenase activity
GO:0008137molecular_functionNADH dehydrogenase (ubiquinone) activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24407.1.S1_at--972--5051Chr01:33910643..33910667 (25 bp)
GCAGCAGATTTTCGCACTACCGGAA
LOC_Os01g58060
OsAffx.24407.1.S1_at--439--10631Chr01:33910633..33910657 (25 bp)
TTCGCACTACCGGAATGGGTCCTTA
LOC_Os01g58060
OsAffx.24407.1.S1_at--419--2971Chr01:33910620..33910644 (25 bp)
AATGGGTCCTTATGATTCTCAAAGA
LOC_Os01g58060
OsAffx.24407.1.S1_at--1054--6471Chr01:33910577..33910601 (25 bp)
GATACCTCGCAGGTGATGCTATCAA
LOC_Os01g58060
OsAffx.24407.1.S1_at--836--632Chr10:14204051..14204075 (25 bp)
ATGCTATCAACTGTGAAGAGGCTTC
LOC_Os10g28020
OsAffx.24407.1.S1_at--160--2792Chr10:14204066..14204090 (25 bp)
AAGAGGCTTCGAGGCAAGATCTACA
LOC_Os10g28020
OsAffx.24407.1.S1_at--361--2812Chr10:14204081..14204105 (25 bp)
AAGATCTACAAACGTCTGCCTCGGC
LOC_Os10g28020
OsAffx.24407.1.S1_at--175--9951Chr01:33910158..33910527 (25 bp)
TACCAAACTCCAAGCGGTTGAGACT
LOC_Os01g58060
OsAffx.24407.1.S1_at--604--1633Chr06:16821251..16821275 (25 bp)
AGCGGTTGAGACTTTCGTTATTCCA
NONE
OsAffx.24407.1.S1_at--829--4231NONE
CCGAGGTATCGGAATGTGCTCCAGA
NONE
OsAffx.24407.1.S1_at--899--491NONE
ATCGGAATGTGCTCCAGAATGTTTC
NONE
Target Sequence 
GCAGCAGATTTTCGCACTACCGGAATGGGTCCTTATGATTCTCAAAGAATGATGAGGGGCAAGGCTGATACCTCGCAGGT
GATGCTATCAACTGTGAAGAGGCTTCGAGGCAAGATCTACAAACGTCTGCCTCGGCTCGCTACCAAACTCCAAGCGGTTG
AGACTTTCGTTATTCCAAATTTACGAAGGGAAGGTTCCGAGGTATCGGAATGTGCTCCAGAATGTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24407.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis