Browse Element(s) Details


OsAffx.32320.1.S1_at

Description gb:BA000029.2
DB_XREF= gi:47118326
GEN=orf162
TID=OsAffx.32320.1
CNT=1
FEA=DNA_52
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein (Oryza sativa (japonica cultivar-group)) mitochondrion
PROD=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5806011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g58030OsAffx.26050.13.S1_x_at9/111+33887116..33887652NAD, putative, expressed
LOC_Os01g58040OsAffx.30473.1.S1_x_at11/111+33894503..33896937Photosystem II D2 protein, putative, expressed
LOC_Os01g58040OsAffx.30473.2.S1_x_at9/111+33894503..33896937Photosystem II D2 protein, putative, expressed
LOC_Os01g58060OsAffx.32320.1.S1_at11/111+33908098..33916953hypothetical protein
LOC_Os01g58060OsAffx.24369.1.S2_at11/111+33908098..33916953hypothetical protein
LOC_Os01g58060OsAffx.24407.2.S1_s_at11/111+33908098..33916953hypothetical protein
LOC_Os01g58060Os.27314.1.S1_at11/111+33908098..33916953hypothetical protein
LOC_Os01g58060OsAffx.24407.1.S1_at9/111+33908098..33916953hypothetical protein
LOC_Os01g58070OsAffx.2355.1.S1_at11/111+33917484..33918509Common central domain of tyrosinase family protein
LOC_Os01g58080Os.4953.2.S1_x_at11/111+33920592..33924187membrane-associated salt-inducible protein, putative, expressed
LOC_Os01g58080Os.4953.1.S1_at11/111+33920592..33924187membrane-associated salt-inducible protein, putative, expressed
LOC_Os01g58100OsAffx.9503.1.S1_at11/111+33928178..33932108Common central domain of tyrosinase family protein
LOC_Os01g58114Os.10123.2.S1_x_at10/111+33936195..33943176expressed protein
LOC_Os01g58114Os.10123.1.S1_at10/111+33936195..33943176expressed protein
LOC_Os01g58114OsAffx.21000.1.S1_at1/111+33936195..33943176expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0045333biological_processcellular respiration
GO:0005739cellular_componentmitochondrion
GO:0003954molecular_functionNADH dehydrogenase activity
GO:0008137molecular_functionNADH dehydrogenase (ubiquinone) activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32320.1.S1_at--92--10392Chr12:8525352..8525376 (25 bp)
TTTTCATTTTCCCAGCGTCCTAGAA
NONE
OsAffx.32320.1.S1_at--847--1612Chr12:8525365..8525389 (25 bp)
AGCGTCCTAGAATTGCCTTTCTGTT
NONE
OsAffx.32320.1.S1_at--231--10032Chr12:8525372..8525396 (25 bp)
TAGAATTGCCTTTCTGTTTTTTCCT
NONE
OsAffx.32320.1.S1_at--197--9472Chr12:8525384..8525408 (25 bp)
TCTGTTTTTTCCTTCTCCTTTTGAT
NONE
OsAffx.32320.1.S1_at--509--9232Chr12:8525393..8525417 (25 bp)
TCCTTCTCCTTTTGATTTTCGTATC
NONE
OsAffx.32320.1.S1_at--339--7991Chr01:33913111..33913135 (25 bp)
GGATGATTCATCGTGGAACCCGTTC
LOC_Os01g58060
OsAffx.32320.1.S1_at--708--6312Chr12:8525546..8525570 (25 bp)
GATGACGGAGAGAATGTTTTACCAA
NONE
OsAffx.32320.1.S1_at--1018--7953Chr12:8525632..8525656 (25 bp)
GGATCAGGCTCAACCCGCGGATGCA
NONE
OsAffx.32320.1.S1_at--29--1132Chr12:8525671..8525695 (25 bp)
AGTGCAAGTCCCTGCCATTTTGAAC
NONE
OsAffx.32320.1.S1_at--1001--7952Chr12:8525728..8525752 (25 bp)
GGATCCAGGGAGAACGCCAGAAGAT
NONE
OsAffx.32320.1.S1_at--376--8332Chr12:8525786..8525810 (25 bp)
GGCTGCTGCTCGTCTTTTGTCGAGT
NONE
Target Sequence 
TTTTCATTTTCCCAGCGTCCTAGAATTGCCTTTCTGTTTTTTCCTTCTCCTTTTGATTTTCGTATCATTATTATTACTTT
GGTTTCTTAATAGGGGGATGATTCATCGTGGAACCCGTTCCCCCAACGAATTGGATTTTCATTTTTTTTTATTTTTGTTT
ACCTATAAATTTTGTTTAGAGACTGTTTTTTTAGATGACGGAGAGAATGTTTTACCAAATCCAGCAGGGGATCAGGCTCA
ACCCGCGGATGCACCCCTTGCTCCTGCAGTGCAAGTCCCTGCCATTTTGAACCCACCCCGGGTTCCATCGATCCCGTCAT
CCCTGGATCCAGGGAGAACGCCAGAAGATCGAGTACGAGAGGGAACAGAGGCAGCAGTCACGGGCTGCTGCTCGTCTTTT
GTCGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32320.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis