Browse Element(s) Details


OsAffx.23834.1.S1_at

Description tigr:9629.m05706
TID=OsAffx.23834.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5817010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g58114Os.10123.2.S1_x_at10/111+33936195..33943176expressed protein
LOC_Os01g58114Os.10123.1.S1_at10/111+33936195..33943176expressed protein
LOC_Os01g58114OsAffx.21000.1.S1_at1/111+33936195..33943176expressed protein
LOC_Os01g58130Os.6683.1.S1_at11/111+33945219..33946022expressed protein
LOC_Os01g58140Os.7983.1.S1_at11/111+33952135..33952891expressed protein
LOC_Os01g58150Os.36901.1.S1_at11/111+33956407..33957868expressed protein
LOC_Os01g58160Os.27541.1.A1_at2/111+33960068..33962191hypothetical protein
LOC_Os01g58160OsAffx.1396.1.S1_x_at1/111+33960068..33962191hypothetical protein
LOC_Os01g58170OsAffx.23834.1.S1_at10/111+33965457..33966349hypothetical protein
LOC_Os01g58194Os.42305.2.S1_x_at11/111+33968802..33977777protein disulfide isomerase, putative, expressed
LOC_Os01g58194Os.8427.1.S1_s_at11/111+33968802..33977777protein disulfide isomerase, putative, expressed
LOC_Os01g58194Os.42305.1.S1_s_at11/111+33968802..33977777protein disulfide isomerase, putative, expressed
LOC_Os01g58194Os.35273.2.S1_at2/111+33968802..33977777protein disulfide isomerase, putative, expressed
LOC_Os01g58194Os.35273.2.S1_x_at1/111+33968802..33977777protein disulfide isomerase, putative, expressed
LOC_Os01g58220Os.38804.1.S1_at10/111+33977992..33982027Protein translation factor SUI1 homolog, putative, expressed
LOC_Os01g58220OsAffx.10645.5.S1_x_at9/111+33977992..33982027Protein translation factor SUI1 homolog, putative, expressed
LOC_Os01g58220Os.52686.1.S1_at2/111+33977992..33982027Protein translation factor SUI1 homolog, putative, expressed
LOC_Os01g58230OsAffx.25270.2.S1_x_at4/111+33982822..33985050hypothetical protein
LOC_Os01g58230OsAffx.5723.1.S1_x_at4/111+33982822..33985050hypothetical protein
LOC_Os01g58230OsAffx.25270.2.S1_at3/111+33982822..33985050hypothetical protein
LOC_Os01g58230OsAffx.1248.1.S1_x_at1/111+33982822..33985050hypothetical protein
LOC_Os01g58240Os.30258.1.S1_at11/111+33986630..33990388Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58240Os.30258.2.S1_x_at10/111+33986630..33990388Subtilisin N-terminal Region family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23834.1.S1_at--150--6211Chr01:33966279..33966303 (25 bp)
GAGGCATGCCTACATCATTCCAAGG
LOC_Os01g58170
OsAffx.23834.1.S1_at--870--9571Chr01:33966265..33966289 (25 bp)
TCATTCCAAGGAGCCGTGCGTGTGC
LOC_Os01g58170
OsAffx.23834.1.S1_at--720--8691Chr01:33966245..33966269 (25 bp)
TGTGCTTCCGATTGTTCCGGGAGGA
LOC_Os01g58170
OsAffx.23834.1.S1_at--429--9811Chr01:33966085..33966168 (25 bp)
TAACTTTGGGCGACCAGAGCAGAGC
LOC_Os01g58170
OsAffx.23834.1.S1_at--898--4131Chr01:33966056..33966080 (25 bp)
CGCGTCGTCCCCAACGTTGAGGTAG
LOC_Os01g58170
OsAffx.23834.1.S1_at--766--7351Chr01:33965992..33966016 (25 bp)
GTGAGCAGGACGTGGACTCCAAAAA
LOC_Os01g58170
OsAffx.23834.1.S1_at--949--2431Chr01:33965971..33965995 (25 bp)
AAAAGGGTAGCAACGCAGCCAGCAA
LOC_Os01g58170
OsAffx.23834.1.S1_at--514--5111Chr01:33965902..33965926 (25 bp)
GCAAGGCGTACCGACTTGACGGCAC
LOC_Os01g58170
OsAffx.23834.1.S1_at--81--8931Chr01:33965886..33965910 (25 bp)
TGACGGCACGCTCAAGGAACTTGGC
LOC_Os01g58170
OsAffx.23834.1.S1_at--182--3891Chr01:33965848..33965872 (25 bp)
CTGTCCTAGACAACGGCACCGGTGA
LOC_Os01g58170
OsAffx.23834.1.S1_at--792--2351NONE
AAACCGTTGCGTCTGTTAGGCCGAT
NONE
Target Sequence 
GAGGCATGCCTACATCATTCCAAGGAGCCGTGCGTGTGCTTCCGATTGTTCCGGGAGGAGGGAAGGTTCATGCTGATGGA
GGTGGGGATCCCCGGGAAGGAGAAGAAGAAGAGGAGAAGGAGGAGGGGAAGAGGATAACTTTGGGCGACCAGAGCAGAGC
CCCTCGCGTCGTCCCCAACGTTGAGGTAGAAGTTCTTCCTGAGGAGCTTGAGGCGGTCAGGGAGGGCAGTGAGCAGGACG
TGGACTCCAAAAAGGGTAGCAACGCAGCCAGCAAGGCCGCAACCTACTCCCAGCTCGAGCGCCCGCGCGTCTCGGAGAGC
AAGGCGTACCGACTTGACGGCACGCTCAAGGAACTTGGCGAGGACGACGGCGCTGTCCTAGACAACGGCACCGGTGACGC
CGGGCGTGGCCATGGAGGACGGGAAACCGTTGCGTCTGTTAGGCCGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23834.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis