Browse Element(s) Details


Os.35273.2.S1_x_at

Description gb:NM_187248.1
DB_XREF= gi:34901581
GEN=P0571D04.5
TID=Os.35273.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.35273 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0571D04.7 (P0571D04.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0571D04.5 (P0571D04.5), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g292405/11expressed protein
LOC_Os07g091501/11expressed protein
LOC_Os01g581941/11protein disulfide isomerase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g29220Os.21044.1.S1_at10/117+17114746..17118720Cyclopropane-fatty-acyl-phospholipid synthase family protein, expressed
LOC_Os07g29230OsAffx.28657.1.S1_x_at11/117+17129366..17130671Protease inhibitor/seed storage/LTP family protein
LOC_Os07g29230OsAffx.28657.1.S1_at11/117+17129366..17130671Protease inhibitor/seed storage/LTP family protein
LOC_Os07g29240Os.35273.2.S1_x_at5/117+17134456..17135033expressed protein
LOC_Os07g29240Os.35273.1.S1_at1/117+17134456..17135033expressed protein
LOC_Os07g29250NANA7+17135559..17136441retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g29260NANA7+17137185..17141552retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g29270Os.35273.1.S1_at4/117+17142580..17142798expressed protein
LOC_Os07g29280NANA7+17157852..17158079hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35273.2.S1_x_at--877--8111Chr07:17134578..17134602 (25 bp)
GGACGTCTTCCACGCGAGGCTGTTC
LOC_Os07g29240
Os.35273.2.S1_x_at--804--3351Chr07:17134588..17134612 (25 bp)
CACGCGAGGCTGTTCACGAACCTGA
LOC_Os07g29240
Os.35273.2.S1_x_at--287--8692Chr07:17134650..17134674 (25 bp)
TGTCGCCGACCTCTACTACGACTGG
LOC_Os07g29240
Os.35273.2.S1_x_at--599--9411Chr07:17134913..17134937 (25 bp)
TCGTCGTCTACTACCAGGAGGTCGC
LOC_Os07g29240
Os.35273.2.S1_x_at--1100--1991Chr07:17134922..17134946 (25 bp)
ACTACCAGGAGGTCGCCACCGGGCG
LOC_Os07g29240
Os.35273.2.S1_x_at--687--5411NONE
GAACTTCCTCGACAAAATCAGAAAC
NONE
Os.35273.2.S1_x_at--578--2531Chr07:17135557..17135581 (25 bp)
AACTACATGCTGTTCAGACCTTCAA
NONE
Os.35273.2.S1_x_at--345--3531Chr07:17135562..17135586 (25 bp)
CATGCTGTTCAGACCTTCAAACATT
NONE
Os.35273.2.S1_x_at--489--9651Chr07:17135570..17135594 (25 bp)
TCAGACCTTCAAACATTTTCAGCAA
NONE
Os.35273.2.S1_x_at--1156--2391Chr07:17135580..17135604 (25 bp)
AAACATTTTCAGCAACATCAGGAAT
NONE
Os.35273.2.S1_x_at--631--100325Chr11:27394237..27394538 (25 bp)
TAGTCATTAATCGTCGTTCACGGCA
NONE
Target Sequence 
GGACGTCTTCCACGCGAGGCTGTTCACGAACCTGACCAACCACTCCGCCGCGTCGACGGGGCCNCCGCTGCGTGTCGCCG
ACCTCTACTACGACTGGNCGCGGCGGCGCAACCTCAACCTGATCCGCTACCAGCTCGCCGCNNNCGACGACCCGCTCTAC
GACGNNNAGNGGGACAACGGCACCANCNTCTACTTCGACTCCCGCTCCTGCCGCACCGAGCGCTTCCCCGTCGGCGTGCT
CCGCCCGGGCTGGCTCGCCGACGGCGGCGGCGTCGTCTACCTCGGCCGGTGGCGCACCGGCGGGATCGAGTGCGACGTGT
GGGACAAGCTGGGGTTCGTCGTCTACTACCAGGAGGTCGCCACCGGGCGCCCCGTCCGCTGGAACTTCCTCGACAAAATC
AGAAACTACATGCTGTTCAGACCTTCAAACATTTTCAGCAACATCAGGAATGTTGGAAATATAGTCATTAATCGTCGTTC
ACGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35273.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis