Browse Element(s) Details


OsAffx.28657.1.S1_at

Description tigr:9635.m02845
TID=OsAffx.28657.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protease inhibitorseed storageLTP family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2923011/11Protease inhibitor/seed storage/LTP family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g29220Os.21044.1.S1_at10/117+17114746..17118720Cyclopropane-fatty-acyl-phospholipid synthase family protein, expressed
LOC_Os07g29230OsAffx.28657.1.S1_x_at11/117+17129366..17130671Protease inhibitor/seed storage/LTP family protein
LOC_Os07g29230OsAffx.28657.1.S1_at11/117+17129366..17130671Protease inhibitor/seed storage/LTP family protein
LOC_Os07g29240Os.35273.2.S1_x_at5/117+17134456..17135033expressed protein
LOC_Os07g29240Os.35273.1.S1_at1/117+17134456..17135033expressed protein
LOC_Os07g29250NANA7+17135559..17136441retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g29260NANA7+17137185..17141552retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g29270Os.35273.1.S1_at4/117+17142580..17142798expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006869biological_processlipid transport
GO:0016020cellular_componentmembrane
GO:0031225cellular_componentanchored to membrane
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28657.1.S1_at--243--4171Chr07:17129647..17129671 (25 bp)
CCCAGGGCTTCCGACATTGCCACAA
LOC_Os07g29230
OsAffx.28657.1.S1_at--343--2211Chr07:17129668..17129692 (25 bp)
ACAACTTCCGACAATCCCAGGGCTT
LOC_Os07g29230
OsAffx.28657.1.S1_at--1112--3271Chr07:17129720..17129744 (25 bp)
CAAATCCCGGAGCTACCACCATTGC
LOC_Os07g29230
OsAffx.28657.1.S1_at--749--7771Chr07:17129783..17129807 (25 bp)
GGTGCACCAGCACGAATCCCCATTA
LOC_Os07g29230
OsAffx.28657.1.S1_at--542--531Chr07:17129837..17129861 (25 bp)
ATCGCACCACAGCAGCCAACGGAGT
LOC_Os07g29230
OsAffx.28657.1.S1_at--485--3311Chr07:17129844..17129868 (25 bp)
CACAGCAGCCAACGGAGTGCTTGTC
LOC_Os07g29230
OsAffx.28657.1.S1_at--1089--4131Chr07:17129880..17129904 (25 bp)
CGCTGATGCCGTGCATGGAGTACGT
LOC_Os07g29230
OsAffx.28657.1.S1_at--975--8851Chr07:17129883..17129907 (25 bp)
TGATGCCGTGCATGGAGTACGTCAC
LOC_Os07g29230
OsAffx.28657.1.S1_at--444--4011Chr07:17129902..17129926 (25 bp)
CGTCACCAAGGCCGATGTGCCGGCT
LOC_Os07g29230
OsAffx.28657.1.S1_at--688--6391Chr07:17130031..17130055 (25 bp)
GATCGATCTCACGCGCATTATGTCT
LOC_Os07g29230
OsAffx.28657.1.S1_at--1022--9671Chr07:17130039..17130063 (25 bp)
TCACGCGCATTATGTCTCTTCCGGC
LOC_Os07g29230
Target Sequence 
CCCAGGGCTTCCGACATTGCCACAACTTCCGACAATCCCAGGGCTTCCACAACTGCCGACACTTCCGACGATCCAAATCC
CGGAGCTACCACCATTGCCACCATTGCCGTCAGTCTCCATCACACCGGGATCACCAGGTGCACCAGCACGAATCCCCATT
AGCTCCCAGAGCGCACTGGCTGCAGCGCCTATCGCACCACAGCAGCCAACGGAGTGCTTGTCGTCGTTGATGGCGCTGAT
GCCGTGCATGGAGTACGTCACCAAGGCCGATGTGCCGGCTCCCCCAAGCGTCTGCTGCGACGGATTCAAGTCGCTCGTGG
AGAAGGCGCCCATCTGCCTCTGCCACGGCATCAACGGCAACATCAGCAAGCTCATGCCGGCGCCGATCGATCTCACGCGC
ATTATGTCTCTTCCGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28657.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis