Browse Element(s) Details


OsAffx.28657.1.S1_x_at

Description tigr:9635.m02845
TID=OsAffx.28657.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protease inhibitorseed storageLTP family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2923011/11Protease inhibitor/seed storage/LTP family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g29220Os.21044.1.S1_at10/117+17114746..17118720Cyclopropane-fatty-acyl-phospholipid synthase family protein, expressed
LOC_Os07g29230OsAffx.28657.1.S1_x_at11/117+17129366..17130671Protease inhibitor/seed storage/LTP family protein
LOC_Os07g29230OsAffx.28657.1.S1_at11/117+17129366..17130671Protease inhibitor/seed storage/LTP family protein
LOC_Os07g29240Os.35273.2.S1_x_at5/117+17134456..17135033expressed protein
LOC_Os07g29240Os.35273.1.S1_at1/117+17134456..17135033expressed protein
LOC_Os07g29250NANA7+17135559..17136441retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g29260NANA7+17137185..17141552retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g29270Os.35273.1.S1_at4/117+17142580..17142798expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006869biological_processlipid transport
GO:0016020cellular_componentmembrane
GO:0031225cellular_componentanchored to membrane
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28657.1.S1_x_at--342--2211Chr07:17129668..17129692 (25 bp)
ACAACTTCCGACAATCCCAGGGCTT
LOC_Os07g29230
OsAffx.28657.1.S1_x_at--420--5771Chr07:17129713..17129737 (25 bp)
GACGATCCAAATCCCGGAGCTACCA
LOC_Os07g29230
OsAffx.28657.1.S1_x_at--1128--7652Chr09:1720318..1720409 (24 bp)
GGGATCACCAGGTGCACCAGCACGA
NONE
OsAffx.28657.1.S1_x_at--748--7771Chr07:17129783..17129807 (25 bp)
GGTGCACCAGCACGAATCCCCATTA
LOC_Os07g29230
OsAffx.28657.1.S1_x_at--543--531Chr07:17129837..17129861 (25 bp)
ATCGCACCACAGCAGCCAACGGAGT
LOC_Os07g29230
OsAffx.28657.1.S1_x_at--484--3311Chr07:17129844..17129868 (25 bp)
CACAGCAGCCAACGGAGTGCTTGTC
LOC_Os07g29230
OsAffx.28657.1.S1_x_at--47--4051Chr07:17129871..17129895 (25 bp)
CGTTGATGGCGCTGATGCCGTGCAT
LOC_Os07g29230
OsAffx.28657.1.S1_x_at--974--8851Chr07:17129883..17129907 (25 bp)
TGATGCCGTGCATGGAGTACGTCAC
LOC_Os07g29230
OsAffx.28657.1.S1_x_at--225--9051Chr07:17129891..17129915 (25 bp)
TGCATGGAGTACGTCACCAAGGCCG
LOC_Os07g29230
OsAffx.28657.1.S1_x_at--67--411Chr07:17130008..17130032 (25 bp)
ATCAGCAAGCTCATGCCGGCGCCGA
LOC_Os07g29230
OsAffx.28657.1.S1_x_at--1021--9671Chr07:17130039..17130063 (25 bp)
TCACGCGCATTATGTCTCTTCCGGC
LOC_Os07g29230
Target Sequence 
ACAACTTCCGACAATCCCAGGGCTTCCACAACTGCCGACACTTCCGACGATCCAAATCCCGGAGCTACCACCATTGCCAC
CATTGCCGTCAGTCTCCATCACACCGGGATCACCAGGTGCACCAGCACGAATCCCCATTAGCTCCCAGAGCGCACTGGCT
GCAGCGCCTATCGCACCACAGCAGCCAACGGAGTGCTTGTCGTCGTTGATGGCGCTGATGCCGTGCATGGAGTACGTCAC
CAAGGCCGATGTGCCGGCTCCCCCAAGCGTCTGCTGCGACGGATTCAAGTCGCTCGTGGAGAAGGCGCCCATCTGCCTCT
GCCACGGCATCAACGGCAACATCAGCAAGCTCATGCCGGCGCCGATCGATCTCACGCGCATTATGTCTCTTCCGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28657.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis