Browse Element(s) Details


Os.21044.1.S1_at

Description gb:AK111684.1
DB_XREF= gi:37988347
TID=Os.21044.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.21044 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013169K10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013169K10, full insert sequence.
FL= gb:AK111684.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2922010/11Cyclopropane-fatty-acyl-phospholipid synthase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g29200NANA7+17096427..17097026hypothetical protein
LOC_Os07g29210NANA7+17103671..17104261hypothetical protein
LOC_Os07g29220Os.21044.1.S1_at10/117+17114746..17118720Cyclopropane-fatty-acyl-phospholipid synthase family protein, expressed
LOC_Os07g29230OsAffx.28657.1.S1_x_at11/117+17129366..17130671Protease inhibitor/seed storage/LTP family protein
LOC_Os07g29230OsAffx.28657.1.S1_at11/117+17129366..17130671Protease inhibitor/seed storage/LTP family protein
LOC_Os07g29240Os.35273.2.S1_x_at5/117+17134456..17135033expressed protein
LOC_Os07g29240Os.35273.1.S1_at1/117+17134456..17135033expressed protein
LOC_Os07g29250NANA7+17135559..17136441retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g29260NANA7+17137185..17141552retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g29270Os.35273.1.S1_at4/117+17142580..17142798expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0008610biological_processlipid biosynthesis
GO:0008825molecular_functioncyclopropane-fatty-acyl-phospholipid synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21044.1.S1_at--945--431Chr07:17116730..17116754 (25 bp)
ATCTCCATCCCTGAAGAACGGTACG
LOC_Os07g29220
Os.21044.1.S1_at--459--9411NONE
TCGTCGAGGCTATGCATCGAGCACT
NONE
Os.21044.1.S1_at--967--8131Chr07:17118142..17118165 (24 bp)
GGACAACTTCATGGCTAACAGAGAA
LOC_Os07g29220
Os.21044.1.S1_at--1097--2311Chr07:17118350..17118374 (25 bp)
AAAGTCCCTGGGATTCGATGACAAG
LOC_Os07g29220
Os.21044.1.S1_at--812--8951Chr07:17118368..17118392 (25 bp)
TGACAAGTTCATCCGCATATGGGAG
LOC_Os07g29220
Os.21044.1.S1_at--1001--9151Chr07:17118408..17118432 (25 bp)
TGCGCAGCTGGGTTCAAGTCACGTA
LOC_Os07g29220
Os.21044.1.S1_at--899--1151Chr07:17118424..17118448 (25 bp)
AGTCACGTACACTTGGAAACTACCA
LOC_Os07g29220
Os.21044.1.S1_at--850--2391Chr07:17118440..17118464 (25 bp)
AAACTACCAGATTGTGTTGTCTCGG
LOC_Os07g29220
Os.21044.1.S1_at--986--3691Chr07:17118524..17118548 (25 bp)
CTAGCCATGAAACCGGCCAACTTGA
LOC_Os07g29220
Os.21044.1.S1_at--930--9831Chr07:17118571..17118595 (25 bp)
TAAAGCTTCCATTGATTGTGTGCGA
LOC_Os07g29220
Os.21044.1.S1_at--699--4951Chr07:17118636..17118660 (25 bp)
GCATTTGAATAACACTCCATTTGAT
LOC_Os07g29220
Target Sequence 
ATCTCCATCCCTGAAGAACGGTACGAAGAATACAGGGGGAGTTCAGANTTCATCAAGGAATACATATTTCCTGGGNGTTG
CCTTCCATCNTTGTCTCGGATAACATCCGCCATGTCCACCTCGTCGAGGCTATGCATCGAGCACTTGGAGAATATTGGGT
ACCACTACTACCCCACGCTGATACGCTGGCGGGACAACTTCATGGCTAACAGAGAAGAGATAAAGTCCCTGGGATTCGAT
GACAAGTTCATCCGCATATGGGAGTACTANTTTCATATACTGCGCAGCTGGGTTCAAGTCACGTACACTTGGAAACTACC
AGATTGTGTTGTCTCGGNCCTGGCAACGACAAGCTGCNTGCCCTTTGCCGACAACCCTTACGCCACCTTCCCGGCAGCCT
AGCCATGAAACCGGCCAACTTGAAAATATATATGTTTNGTCTAGCTAAAGCTTCCATTGATTGTGTGCGAATGTGCAAAC
AGCATGAAACGATTCATTTGATTGATATATGCATTTGAATAACACTCCATTTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21044.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis