Browse Element(s) Details


Os.35273.1.S1_at

Description gb:AK068238.1
DB_XREF= gi:32978256
TID=Os.35273.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.35273 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0571D04.7 (P0571D04.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013149J12, full insert sequence.
FL= gb:AK068238.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g292704/11expressed protein
LOC_Os07g292401/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g29220Os.21044.1.S1_at10/117+17114746..17118720Cyclopropane-fatty-acyl-phospholipid synthase family protein, expressed
LOC_Os07g29230OsAffx.28657.1.S1_x_at11/117+17129366..17130671Protease inhibitor/seed storage/LTP family protein
LOC_Os07g29230OsAffx.28657.1.S1_at11/117+17129366..17130671Protease inhibitor/seed storage/LTP family protein
LOC_Os07g29240Os.35273.2.S1_x_at5/117+17134456..17135033expressed protein
LOC_Os07g29240Os.35273.1.S1_at1/117+17134456..17135033expressed protein
LOC_Os07g29250NANA7+17135559..17136441retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g29260NANA7+17137185..17141552retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g29270Os.35273.1.S1_at4/117+17142580..17142798expressed protein
LOC_Os07g29280NANA7+17157852..17158079hypothetical protein
LOC_Os07g29290Os.5937.1.S1_at10/117+17160571..17164004Rare lipoprotein A like double-psi beta-barrel containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35273.1.S1_at--683--9371Chr07:17134742..17134766 (25 bp)
TCGAGTGGGACAACGGCACCACCTT
LOC_Os07g29240
Os.35273.1.S1_at--482--5351Chr07:17142558..17142582 (25 bp)
GACAGGGATACAGCAATTCGTGATG
NONE
Os.35273.1.S1_at--640--691Chr07:17142580..17142604 (25 bp)
ATGAGCTTCGAGGTCGGCGTGACCC
NONE
Os.35273.1.S1_at--1073--9431Chr07:17142593..17142617 (25 bp)
TCGGCGTGACCCTGGAGGACGATTC
LOC_Os07g29270
Os.35273.1.S1_at--1004--951Chr07:17142608..17142632 (25 bp)
AGGACGATTCCCAGTGGCAGGCGCC
LOC_Os07g29270
Os.35273.1.S1_at--352--5931Chr07:17142711..17142735 (25 bp)
GAGCAGCTATGATCACATTGAGGGT
LOC_Os07g29270
Os.35273.1.S1_at--693--3471Chr07:17142759..17142783 (25 bp)
CAGGTTACTCAGGATGCTCGCAGGA
LOC_Os07g29270
Os.35273.1.S1_at--471--8051Chr07:17142781..17142805 (25 bp)
GGAGCTGCGGCGTTTTAGTTACCAA
NONE
Os.35273.1.S1_at--670--2871Chr07:17142804..17142828 (25 bp)
AAGTGGCTCGAATTTTTGTGCAAAC
NONE
Os.35273.1.S1_at--89--7351Chr07:17142821..17142845 (25 bp)
GTGCAAACATATACTGGTACAGGCT
NONE
Os.35273.1.S1_at--221--7031Chr07:17142837..17142861 (25 bp)
GTACAGGCTTACAGCACAGTACTGT
NONE
Target Sequence 
TCGAGTGGGACAACGGCACCACCTTCTACTTCGACTCCCGCTCCTGCCGCACCGAGCGCTTCCCCGTCGGCGTGCTCCGC
CCGGGCTGGCTCGCCGACGGCGGCGGCGTCGTCTACCTCGGCCGGTGGCGCACCGGCGGGATCGAGTGCGACGTGTGGGA
CAAGCTGGGGTTCGTCGTCTACTACCAGGAGGTCGCCACCGGGCGCCCCGTCCGCTGGAACTTCCTCGACAAGACAGGGA
TACAGCAATTCGTGATGAGCTTCGAGGTCGGCGTGACCCTGGAGGACGATTCCCAGTGGCAGGCGCCCGCACACTGCTTC
CCTGCCGCCGCCGCAGACGAAGATGAAGAGGAAGAGGAAGATGAAGAACAGGATGAGATGATCAAGAGCAGCTATGATCA
CATTGAGGGTGTGGATGACGGGCTCGACGCCGCCAGGTTACTCAGGATGCTCGCAGGAGCTGCGGCGTTTTAGTTACCAA
GTGGCTCGAATTTTTGTGCAAACATATACTGGTACAGGCTTACAGCACAGTACTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35273.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis