Browse Element(s) Details


OsAffx.10645.5.S1_x_at

Description gb:NM_183907.1
DB_XREF= gi:34894941
GEN=P0487E11.7
TID=OsAffx.10645.5
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0487E11.7 (P0487E11.7), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g582209/11Protein translation factor SUI1 homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g58150Os.36901.1.S1_at11/111+33956407..33957868expressed protein
LOC_Os01g58160Os.27541.1.A1_at2/111+33960068..33962191hypothetical protein
LOC_Os01g58160OsAffx.1396.1.S1_x_at1/111+33960068..33962191hypothetical protein
LOC_Os01g58170OsAffx.23834.1.S1_at10/111+33965457..33966349hypothetical protein
LOC_Os01g58194Os.42305.2.S1_x_at11/111+33968802..33977777protein disulfide isomerase, putative, expressed
LOC_Os01g58194Os.8427.1.S1_s_at11/111+33968802..33977777protein disulfide isomerase, putative, expressed
LOC_Os01g58194Os.42305.1.S1_s_at11/111+33968802..33977777protein disulfide isomerase, putative, expressed
LOC_Os01g58194Os.35273.2.S1_at2/111+33968802..33977777protein disulfide isomerase, putative, expressed
LOC_Os01g58194Os.35273.2.S1_x_at1/111+33968802..33977777protein disulfide isomerase, putative, expressed
LOC_Os01g58220Os.38804.1.S1_at10/111+33977992..33982027Protein translation factor SUI1 homolog, putative, expressed
LOC_Os01g58220OsAffx.10645.5.S1_x_at9/111+33977992..33982027Protein translation factor SUI1 homolog, putative, expressed
LOC_Os01g58220Os.52686.1.S1_at2/111+33977992..33982027Protein translation factor SUI1 homolog, putative, expressed
LOC_Os01g58230OsAffx.25270.2.S1_x_at4/111+33982822..33985050hypothetical protein
LOC_Os01g58230OsAffx.5723.1.S1_x_at4/111+33982822..33985050hypothetical protein
LOC_Os01g58230OsAffx.25270.2.S1_at3/111+33982822..33985050hypothetical protein
LOC_Os01g58230OsAffx.1248.1.S1_x_at1/111+33982822..33985050hypothetical protein
LOC_Os01g58240Os.30258.1.S1_at11/111+33986630..33990388Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58240Os.30258.2.S1_x_at10/111+33986630..33990388Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58260Os.5242.1.S1_at11/111+33994877..33999386Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58260Os.30258.2.S1_x_at1/111+33994877..33999386Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58270OsAffx.23836.1.S1_at11/111+34001253..34006565Subtilisin N-terminal Region family protein

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Gene Ontology Classification
GO idTypeName
GO:0006413biological_processtranslational initiation
GO:0003743molecular_functiontranslation initiation factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10645.5.S1_x_at--910--50718Chr12:21295152..21295176 (25 bp)
GCACCGACCGTTTCAATCGGTATCG
NONE
OsAffx.10645.5.S1_x_at--770--38517Chr12:6743234..6743258 (25 bp)
CCGTTTCAATCGGTATCGGTAATTG
NONE
OsAffx.10645.5.S1_x_at--542--94319Chr12:6743243..6743266 (24 bp)
TCGGTATCGGTAATTGTCGGTATCG
NONE
OsAffx.10645.5.S1_x_at--319--69119Chr09:15269184..15269208 (25 bp)
GTATCGGTAATTGTCGGTATCGGAA
NONE
OsAffx.10645.5.S1_x_at--814--4922Chr12:21295167..21295197 (25 bp)
ATCGGTAATTGTCGGTATCGGAAAT
NONE
OsAffx.10645.5.S1_x_at--1015--70522Chr12:21295178..21295201 (24 bp)
GTAATTGTCGGTATCGGAAATGGAA
NONE
OsAffx.10645.5.S1_x_at--217--3911Chr01:13187722..13188061 (25 bp)
CGGAAATGGAAATGCCGGCCACCTT
NONE
OsAffx.10645.5.S1_x_at--900--8131Chr01:13187721..13188060 (25 bp)
GGAAATGGAAATGCCGGCCACCTTC
NONE
OsAffx.10645.5.S1_x_at--240--92913Chr12:21295558..21295582 (25 bp)
TCCGTGCCACCGAGCCAAGCGCCGA
NONE
OsAffx.10645.5.S1_x_at--636--95116Chr12:21295694..21295718 (25 bp)
TCTCGGGCGCGCGTGAAGGAGCCAA
NONE
OsAffx.10645.5.S1_x_at--493--58513Chr12:19499883..19499907 (25 bp)
GAGCCAAAGGCAGAGAAGAGAACGA
NONE
Target Sequence 
GCACCGACCGTTTCAATCGGTATCGGTAATTGTCGGTATCGGAAATGGAAATGCCGGCCACCTTCCCTCCCCCATGCTCC
ACCGCCGGCTTCCGTGCCACCGAGCCAAGCGCCGAGCGCCGCCGCACCGCCCCAGCCTCCTCCTCCCCACCGATGCCGCC
CCTTTCTCCTCTCTCCTTCCCCCACCGCCGCCCTGCGCCAGGCCGCCATCTCCGGCGCCTCTCTCCTCTCGGGCGCGCGT
GAAGGAGCCAAAGGCAGAGAAGAGAACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10645.5.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis