Browse Element(s) Details


Os.42305.2.S1_x_at

Description gb:NM_190880.1
DB_XREF= gi:34908843
GEN=P0684C02.13
TID=Os.42305.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.42305 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) PDI-like protein (P0684C02.13), mRNA.
PROD=PDI-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5819411/11protein disulfide isomerase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g58130Os.6683.1.S1_at11/111+33945219..33946022expressed protein
LOC_Os01g58140Os.7983.1.S1_at11/111+33952135..33952891expressed protein
LOC_Os01g58150Os.36901.1.S1_at11/111+33956407..33957868expressed protein
LOC_Os01g58160Os.27541.1.A1_at2/111+33960068..33962191hypothetical protein
LOC_Os01g58160OsAffx.1396.1.S1_x_at1/111+33960068..33962191hypothetical protein
LOC_Os01g58170OsAffx.23834.1.S1_at10/111+33965457..33966349hypothetical protein
LOC_Os01g58194Os.42305.2.S1_x_at11/111+33968802..33977777protein disulfide isomerase, putative, expressed
LOC_Os01g58194Os.8427.1.S1_s_at11/111+33968802..33977777protein disulfide isomerase, putative, expressed
LOC_Os01g58194Os.42305.1.S1_s_at11/111+33968802..33977777protein disulfide isomerase, putative, expressed
LOC_Os01g58194Os.35273.2.S1_at2/111+33968802..33977777protein disulfide isomerase, putative, expressed
LOC_Os01g58194Os.35273.2.S1_x_at1/111+33968802..33977777protein disulfide isomerase, putative, expressed
LOC_Os01g58220Os.38804.1.S1_at10/111+33977992..33982027Protein translation factor SUI1 homolog, putative, expressed
LOC_Os01g58220OsAffx.10645.5.S1_x_at9/111+33977992..33982027Protein translation factor SUI1 homolog, putative, expressed
LOC_Os01g58220Os.52686.1.S1_at2/111+33977992..33982027Protein translation factor SUI1 homolog, putative, expressed
LOC_Os01g58230OsAffx.25270.2.S1_x_at4/111+33982822..33985050hypothetical protein
LOC_Os01g58230OsAffx.5723.1.S1_x_at4/111+33982822..33985050hypothetical protein
LOC_Os01g58230OsAffx.25270.2.S1_at3/111+33982822..33985050hypothetical protein
LOC_Os01g58230OsAffx.1248.1.S1_x_at1/111+33982822..33985050hypothetical protein
LOC_Os01g58240Os.30258.1.S1_at11/111+33986630..33990388Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58240Os.30258.2.S1_x_at10/111+33986630..33990388Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58260Os.5242.1.S1_at11/111+33994877..33999386Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58260Os.30258.2.S1_x_at1/111+33994877..33999386Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58270OsAffx.23836.1.S1_at11/111+34001253..34006565Subtilisin N-terminal Region family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.42305.2.S1_x_at--113--1031Chr01:33970039..33970063 (25 bp)
AGGTCATCTTCGTGTCGTGCGACGA
LOC_Os01g58194
Os.42305.2.S1_x_at--383--1471Chr01:33970063..33970087 (25 bp)
AGAATCGACCGTCCTTCGAGAGGTT
LOC_Os01g58194
Os.42305.2.S1_x_at--524--4311Chr01:33970117..33970141 (25 bp)
CCTTCGGCGACATCGGGTGCAAGAA
LOC_Os01g58194
Os.42305.2.S1_x_at--1098--491Chr01:33970128..33970152 (25 bp)
ATCGGGTGCAAGAAGCGCCTCAGCG
LOC_Os01g58194
Os.42305.2.S1_x_at--656--4291Chr01:33970145..33970169 (25 bp)
CCTCAGCGAGAGGTTCCAGGTCGAG
LOC_Os01g58194
Os.42305.2.S1_x_at--719--7191Chr01:33970209..33970233 (25 bp)
GTCGTGCAGCCTGATGCCGTCGAGC
LOC_Os01g58194
Os.42305.2.S1_x_at--167--91Chr01:33970259..33970283 (25 bp)
ATTCCCCTTCACGTCGGCGAGGGTG
LOC_Os01g58194
Os.42305.2.S1_x_at--665--5931Chr01:33970302..33970326 (25 bp)
GAGCAGCGCAAGTTCGCGTCTCAGA
LOC_Os01g58194
Os.42305.2.S1_x_at--485--4651Chr01:33970317..33970341 (25 bp)
GCGTCTCAGACGCTGGAGAAGATCT
LOC_Os01g58194
Os.42305.2.S1_x_at--13--1291Chr01:33970336..33970360 (25 bp)
AGATCTTCTCCGTCAGCGGGAAAGA
LOC_Os01g58194
Os.42305.2.S1_x_at--282--6971Chr01:33970372..33970754 (25 bp)
GTAGCCAAGAACAGCTCCGGATCCG
LOC_Os01g58194
Target Sequence 
AGGTCATCTTCGTGTCGTGCGACGAGAATCGACCGTCCTTCGAGAGGTTCCACCGCGCCATGCCGTGGCCCGCCGTGCCC
TTCGGCGACATCGGGTGCAAGAAGCGCCTCAGCGAGAGGTTCCAGGTCGAGGGCATCCCGCGCCTGGTGGTGCTCGCCCC
GAACGGCGAGGTCGTGCAGCCTGATGCCGTCGAGCTCGTGCACCGCTACGGCGATCGGGCATTCCCCTTCACGTCGGCGA
GGGTGGCGGAGCTGGAGGCCGACGAGCAGCGCAAGTTCGCGTCTCAGACGCTGGAGAAGATCTTCTCCGTCAGCGGGAAA
GACTACGTGAACGGTAGCCAAGAACAGCTCCGGATCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.42305.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis