Browse Element(s) Details


Os.28433.4.A1_at

Description gb:AK100351.1
DB_XREF= gi:32985560
TID=Os.28433.4
CNT=13
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.28433 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative subtilase (P0699H05.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023083C17, full insert sequence.
FL= gb:AK100351.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5829010/11Subtilisin N-terminal Region family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g58260Os.5242.1.S1_at11/111+33994877..33999386Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58260Os.30258.2.S1_x_at1/111+33994877..33999386Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58270OsAffx.23836.1.S1_at11/111+34001253..34006565Subtilisin N-terminal Region family protein
LOC_Os01g58280Os.35642.2.S1_x_at11/111+34010031..34015042Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58280Os.48715.1.A1_x_at4/111+34010031..34015042Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58280Os.5139.2.S1_at1/111+34010031..34015042Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58280Os.5139.2.S1_x_at1/111+34010031..34015042Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58290Os.28433.5.S1_x_at11/111+34018642..34023374Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58290Os.28433.4.A1_at10/111+34018642..34023374Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58300OsAffx.26617.1.S1_at10/111+34023403..34024850hypothetical protein
LOC_Os01g58300OsAffx.26617.4.S1_x_at4/111+34023403..34024850hypothetical protein
LOC_Os01g58310Os.28798.1.S1_at11/111+34025976..34026530expressed protein
LOC_Os01g58310Os.42298.1.S1_x_at3/111+34025976..34026530expressed protein
LOC_Os01g58320Os.10196.1.S1_at9/111+34030250..34030708expressed protein
LOC_Os01g58320Os.42299.1.S1_x_at3/111+34030250..34030708expressed protein
LOC_Os01g58330OsAffx.23837.1.S1_at10/111+34031809..34032977hypothetical protein
LOC_Os01g58330Os.6.2.S1_at2/111+34031809..34032977hypothetical protein
LOC_Os01g58340NANA1+34037035..34038059hypothetical protein
LOC_Os01g58350OsAffx.23838.2.S1_at11/111+34040491..34042290hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004289molecular_functionsubtilase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28433.4.A1_at--628--6431Chr01:34023101..34023125 (25 bp)
GATCATCTACATATGGTCACCTTAG
LOC_Os01g58290
Os.28433.4.A1_at--457--7791Chr01:34023115..34023139 (25 bp)
GGTCACCTTAGATCGGAAAACTACT
LOC_Os01g58290
Os.28433.4.A1_at--371--5491Chr01:34023130..34023154 (25 bp)
GAAAACTACTTGTACTTGGCAAAAT
LOC_Os01g58290
Os.28433.4.A1_at--196--8231Chr01:34023147..34023171 (25 bp)
GGCAAAATTTTCTTGCACTATCTAC
LOC_Os01g58290
Os.28433.4.A1_at--856--5091Chr01:34023161..34023185 (25 bp)
GCACTATCTACAATAAATCCTTCGA
LOC_Os01g58290
Os.28433.4.A1_at--269--571Chr01:34023177..34023201 (25 bp)
ATCCTTCGATTTTATGGTTCTACTG
LOC_Os01g58290
Os.28433.4.A1_at--60--831Chr01:34023190..34023214 (25 bp)
ATGGTTCTACTGCTGATCACACAAG
LOC_Os01g58290
Os.28433.4.A1_at--117--9651Chr01:34023266..34023290 (25 bp)
TCAGTTCCCGCCGTCGAGTTGGGAA
LOC_Os01g58290
Os.28433.4.A1_at--937--591Chr01:34023298..34023322 (25 bp)
ATGCGAACTTGCAAAGCCGCCGGCG
LOC_Os01g58290
Os.28433.4.A1_at--164--3991NONE
CGTGGCTTGCTTGATTGCTTCCGTA
NONE
Os.28433.4.A1_at--811--9051Chr01:34023336..34023360 (25 bp)
TGCTTCCGTAGTTGGATAGGCCCGC
LOC_Os01g58290
Target Sequence 
GATCATCTACATATGGTCACCTTAGATCGGAAAACTACTTGTACTTGGCAAAATTTTCTTGCACTATCTACAATAAATCC
TTCGATTTTATGGTTCTACTGCTGATCACACAAGGCACAACGGGGTACCTGGATGGCTAGATGCTGACCGGGCGGCGGCG
AGCAGTCAGTTCCCGCCGTCGAGTTGGGAATGCGGCCATGCGAACTTGCAAAGCCGCCGGCGTGGCTTGCTTGATTGCTT
CCGTAGTTGGATAGGCCCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28433.4.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis