Browse Element(s) Details


OsAffx.23837.1.S1_at

Description tigr:9629.m05723
TID=OsAffx.23837.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5833010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g58280Os.35642.2.S1_x_at11/111+34010031..34015042Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58280Os.48715.1.A1_x_at4/111+34010031..34015042Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58280Os.5139.2.S1_at1/111+34010031..34015042Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58280Os.5139.2.S1_x_at1/111+34010031..34015042Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58290Os.28433.5.S1_x_at11/111+34018642..34023374Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58290Os.28433.4.A1_at10/111+34018642..34023374Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58300OsAffx.26617.1.S1_at10/111+34023403..34024850hypothetical protein
LOC_Os01g58300OsAffx.26617.4.S1_x_at4/111+34023403..34024850hypothetical protein
LOC_Os01g58310Os.28798.1.S1_at11/111+34025976..34026530expressed protein
LOC_Os01g58310Os.42298.1.S1_x_at3/111+34025976..34026530expressed protein
LOC_Os01g58320Os.10196.1.S1_at9/111+34030250..34030708expressed protein
LOC_Os01g58320Os.42299.1.S1_x_at3/111+34030250..34030708expressed protein
LOC_Os01g58330OsAffx.23837.1.S1_at10/111+34031809..34032977hypothetical protein
LOC_Os01g58330Os.6.2.S1_at2/111+34031809..34032977hypothetical protein
LOC_Os01g58340NANA1+34037035..34038059hypothetical protein
LOC_Os01g58350OsAffx.23838.2.S1_at11/111+34040491..34042290hypothetical protein
LOC_Os01g58370OsAffx.11647.1.S1_at11/111+34055156..34055398hypothetical protein
LOC_Os01g58380Os.9992.1.S1_a_at11/111+34057226..340598583-hydroxybutyryl-CoA dehydrogenase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23837.1.S1_at--474--4411Chr01:34032964..34032988 (25 bp)
GCCAGCCCGACATGGGAGACGCCGA
NONE
OsAffx.23837.1.S1_at--924--4151Chr01:34032945..34032969 (25 bp)
CGCCGAGGCCGTCCGATCTTATGGA
LOC_Os01g58330
OsAffx.23837.1.S1_at--465--7251Chr01:34032935..34032959 (25 bp)
GTCCGATCTTATGGACGATCCCGAT
LOC_Os01g58330
OsAffx.23837.1.S1_at--776--8111Chr01:34032923..34032947 (25 bp)
GGACGATCCCGATTGATTCCAACAT
LOC_Os01g58330
OsAffx.23837.1.S1_at--802--6371Chr01:34032919..34032943 (25 bp)
GATCCCGATTGATTCCAACATGGAA
LOC_Os01g58330
OsAffx.23837.1.S1_at--1113--3631Chr01:34032846..34032870 (25 bp)
CTTCCTCTTCCTCGCGAAAAGCAAT
LOC_Os01g58330
OsAffx.23837.1.S1_at--602--9571Chr01:34032841..34032865 (25 bp)
TCTTCCTCGCGAAAAGCAATGGCGG
LOC_Os01g58330
OsAffx.23837.1.S1_at--893--6551Chr01:34032780..34032804 (25 bp)
GATTCCGGCGAAGCGACAGCGTTTC
LOC_Os01g58330
OsAffx.23837.1.S1_at--900--5411Chr01:34032771..34032795 (25 bp)
GAAGCGACAGCGTTTCCAACAAGCA
LOC_Os01g58330
OsAffx.23837.1.S1_at--797--2151Chr01:34032765..34032789 (25 bp)
ACAGCGTTTCCAACAAGCAGCAACA
LOC_Os01g58330
OsAffx.23837.1.S1_at--920--1511Chr01:34032290..34032774 (25 bp)
AGCAGCAACAGGTTGCATTTACCGC
LOC_Os01g58330
Target Sequence 
GCCAGCCCGACATGGGAGACGCCGAGGCCGTCCGATCTTATGGACGATCCCGATTGATTCCAACATGGAAAAAAATTCGG
CAGCCCAACCCTAACCCTAAAATCATTTCCCCGATCCCCTTCCTCTTCCTCGCGAAAAGCAATGGCGGCGGCGGTGATTC
GGGCGGAGTGATGGTGGCGGCGACGATTCCGGCGAAGCGACAGCGTTTCCAACAAGCAGCAACAGGTTGCATTTACCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23837.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis