Browse Element(s) Details


OsAffx.11647.1.S1_at

Description tigr:9629.m05727
TID=OsAffx.11647.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5837011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g58320Os.10196.1.S1_at9/111+34030250..34030708expressed protein
LOC_Os01g58320Os.42299.1.S1_x_at3/111+34030250..34030708expressed protein
LOC_Os01g58330OsAffx.23837.1.S1_at10/111+34031809..34032977hypothetical protein
LOC_Os01g58330Os.6.2.S1_at2/111+34031809..34032977hypothetical protein
LOC_Os01g58340NANA1+34037035..34038059hypothetical protein
LOC_Os01g58350OsAffx.23838.2.S1_at11/111+34040491..34042290hypothetical protein
LOC_Os01g58370OsAffx.11647.1.S1_at11/111+34055156..34055398hypothetical protein
LOC_Os01g58380Os.9992.1.S1_a_at11/111+34057226..340598583-hydroxybutyryl-CoA dehydrogenase, putative, expressed
LOC_Os01g58390Os.45906.1.S1_at6/111+34060342..34062309HAD superfamily phosphatase, TIGR01668 containing protein
LOC_Os01g58400Os.50275.1.S1_at11/111+34067498..34072706Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g58410NANA1+34074835..34077087hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11647.1.S1_at--389--9491Chr01:34055208..34055232 (25 bp)
TCTGCGTCTGCGTGGCGAGCCACAT
LOC_Os01g58370
OsAffx.11647.1.S1_at--989--4011Chr01:34055212..34055236 (25 bp)
CGTCTGCGTGGCGAGCCACATGGAC
LOC_Os01g58370
OsAffx.11647.1.S1_at--1055--1691Chr01:34055225..34055249 (25 bp)
AGCCACATGGACGTGGACGAGCGCC
LOC_Os01g58370
OsAffx.11647.1.S1_at--412--4371Chr01:34055227..34055251 (25 bp)
CCACATGGACGTGGACGAGCGCCGA
LOC_Os01g58370
OsAffx.11647.1.S1_at--131--2111Chr01:34055229..34055253 (25 bp)
ACATGGACGTGGACGAGCGCCGAGG
LOC_Os01g58370
OsAffx.11647.1.S1_at--202--5911Chr01:34055256..34055280 (25 bp)
GAGCTCGCGCCTACATGGGCGGCCA
LOC_Os01g58370
OsAffx.11647.1.S1_at--455--1931Chr01:34055280..34055304 (25 bp)
ACGGCAGGCCCGTGGGCATCAGACC
LOC_Os01g58370
OsAffx.11647.1.S1_at--457--891Chr01:34055285..34055309 (25 bp)
AGGCCCGTGGGCATCAGACCCAGAA
LOC_Os01g58370
OsAffx.11647.1.S1_at--329--8411Chr01:34055286..34055310 (25 bp)
GGCCCGTGGGCATCAGACCCAGAAC
LOC_Os01g58370
OsAffx.11647.1.S1_at--29--7491Chr01:34055291..34055315 (25 bp)
GTGGGCATCAGACCCAGAACCAGCG
LOC_Os01g58370
OsAffx.11647.1.S1_at--852--8271Chr01:34055294..34055318 (25 bp)
GGCATCAGACCCAGAACCAGCGGCA
LOC_Os01g58370
Target Sequence 
TCTGCGTCTGCGTGGCGAGCCACATGGACGTGGACGAGCGCCGAGGCGGAGCTCGCGCCTACATGGGCGGCCACGGCAGG
CCCGTGGGCATCAGACCCAGAACCAGCGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11647.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis