Browse Element(s) Details


Os.6.2.S1_at

Description gb:AK111285.1
DB_XREF= gi:32996494
TID=Os.6.2
CNT=17
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) mRNA for 21kd polypeptide, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-180-H08, full insert sequence.
FL= gb:AK111285.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g273894/11
LOC_Os01g583302/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g27370OsAffx.16940.2.S1_s_at11/112+16129148..16129498hypothetical protein
LOC_Os02g27370OsAffx.24405.1.S1_at2/112+16129148..16129498hypothetical protein
LOC_Os02g27370OsAffx.16940.1.S1_at1/112+16129148..16129498hypothetical protein
LOC_Os02g27380NANA2+16130523..16138359retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g27389Os.6.2.S1_at4/112+16141077..16141953NA
LOC_Os02g27389Os.50295.1.S1_at1/112+16141077..16141953NA
LOC_Os02g27400Os.16914.1.S1_at11/112+16144177..16147057F-box protein interaction domain containing protein, expressed
LOC_Os02g27400Os.16914.1.S2_at11/112+16144177..16147057F-box protein interaction domain containing protein, expressed
LOC_Os02g27420NANA2+16150406..16154260transposon protein, putative, Mutator sub-class
LOC_Os02g27430OsAffx.24294.1.S1_at3/112+16154595..16155020GRF zinc finger family protein
LOC_Os02g27440Os.46744.1.S1_at11/112+16166830..16174467Topoisomerase DNA binding C4 zinc finger family protein, expressed
LOC_Os02g27440OsAffx.24454.2.S1_x_at11/112+16166830..16174467Topoisomerase DNA binding C4 zinc finger family protein, expressed
LOC_Os02g27440OsAffx.24454.1.S1_at11/112+16166830..16174467Topoisomerase DNA binding C4 zinc finger family protein, expressed
LOC_Os02g27440Os.7779.1.S2_x_at10/112+16166830..16174467Topoisomerase DNA binding C4 zinc finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6.2.S1_at--975--9271Chr02:16140846..16140870 (25 bp)
TCCGGCGGAGCCACAATGATTCCAA
NONE
Os.6.2.S1_at--301--732Chr03:3510163..3510182 (20 bp)
ATGATTCCAACAAGCGGCAACAGCG
NONE
Os.6.2.S1_at--1043--10652Chr02:16140895..16140919 (25 bp)
TTCCTTTCTCTCGTGAAAAGCGGCG
NONE
Os.6.2.S1_at--57--4311Chr02:16140909..16140933 (25 bp)
GAAAAGCGGCGGTGGCGACAATTCC
NONE
Os.6.2.S1_at--919--9991Chr02:16140953..16140977 (25 bp)
TAGCGTGAAGCCACGGCTGTCTGAG
NONE
Os.6.2.S1_at--23--5871Chr02:16140975..16140999 (25 bp)
GAGCCACTCGGATATCGTGCAGCGA
NONE
Os.6.2.S1_at--121--4091Chr02:16141012..16141036 (25 bp)
CGAGCCCGGTCTGATGTCATGCGTG
NONE
Os.6.2.S1_at--1085--593Chr12:2276031..2276050 (20 bp)
ATGCCGTGCTCGCATCACATGATGG
NONE
Os.6.2.S1_at--14--7071Chr02:16141208..16141232 (25 bp)
GTAAGTCATCAATCCGATTCGCTTG
LOC_Os02g27389
Os.6.2.S1_at--1131--6572Chr02:16141223..16141247 (25 bp)
GATTCGCTTGCCGAGGTTCTAATTT
LOC_Os02g27389
Os.6.2.S1_at--29--8992Chr02:16141312..16141336 (25 bp)
TGAAGTTCTCATGGTGTAACACGAT
LOC_Os02g27389
Target Sequence 
TCCGGCGGAGCCACAATGATTCCAACAAGCGGCAACAGCGCGAAGTCCCTTCCTTTCTCTCGTGAAAAGCGGCGGTGGCG
ACAATTCCGGCGAGCGGCGATGGCGCGTAGCGTGAAGCCACGGCTGTCTGAGCCACTCGGATATCGTGCAGCGAACTGAT
GCCACCCGAGCCCGGTCTGATGTCATGCGTGGCGCCGTCCTGGTTCTCCTCCGCACGCAGCCAAGGCCGCGATGACGAGC
CTCGACCTCACACGACCCCCAAAAGACGGGCGCAAGGCCGGTCCAAGGCGATGGCTAGGGTGCGTGCACGGCGGTGCTGA
TGCCGTGCTCGCATCACATGATGGCAGCAATTTGCCAAATCGGTAAGTCATCAATCCGATTCGCTTGCCGAGGTTCTAAT
TTTGGGGACTTTTCGATTTAGGGTTTCTGAAATCATGCCAGTGTGGAATTTTTGTATGTTGTATATTGAAGTTCTCATGG
TGTAACACGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis