Browse Element(s) Details


Os.16914.1.S2_at

Description gb:AK100540.1
DB_XREF= gi:32985749
TID=Os.16914.1
CNT=20
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.16914 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023102H11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023102H11, full insert sequence.
FL= gb:AK066609.1 gb:AK100540.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2740011/11F-box protein interaction domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g27370OsAffx.16940.2.S1_s_at11/112+16129148..16129498hypothetical protein
LOC_Os02g27370OsAffx.24405.1.S1_at2/112+16129148..16129498hypothetical protein
LOC_Os02g27370OsAffx.16940.1.S1_at1/112+16129148..16129498hypothetical protein
LOC_Os02g27380NANA2+16130523..16138359retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g27389Os.6.2.S1_at4/112+16141077..16141953NA
LOC_Os02g27389Os.50295.1.S1_at1/112+16141077..16141953NA
LOC_Os02g27400Os.16914.1.S1_at11/112+16144177..16147057F-box protein interaction domain containing protein, expressed
LOC_Os02g27400Os.16914.1.S2_at11/112+16144177..16147057F-box protein interaction domain containing protein, expressed
LOC_Os02g27420NANA2+16150406..16154260transposon protein, putative, Mutator sub-class
LOC_Os02g27430OsAffx.24294.1.S1_at3/112+16154595..16155020GRF zinc finger family protein
LOC_Os02g27440Os.46744.1.S1_at11/112+16166830..16174467Topoisomerase DNA binding C4 zinc finger family protein, expressed
LOC_Os02g27440OsAffx.24454.2.S1_x_at11/112+16166830..16174467Topoisomerase DNA binding C4 zinc finger family protein, expressed
LOC_Os02g27440OsAffx.24454.1.S1_at11/112+16166830..16174467Topoisomerase DNA binding C4 zinc finger family protein, expressed
LOC_Os02g27440Os.7779.1.S2_x_at10/112+16166830..16174467Topoisomerase DNA binding C4 zinc finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16914.1.S2_at--1119--7951Chr02:16146475..16146499 (25 bp)
GGATCTGTGTGTGTCGGCGTCTAAC
LOC_Os02g27400
Os.16914.1.S2_at--843--4751Chr02:16146514..16146538 (25 bp)
GCTGAACATATGGACGCTGCCTGTA
LOC_Os02g27400
Os.16914.1.S2_at--173--3831Chr02:16146530..16146554 (25 bp)
CTGCCTGTAGCGGACGAGAGCCTGT
LOC_Os02g27400
Os.16914.1.S2_at--248--6011Chr02:16146545..16146569 (25 bp)
GAGAGCCTGTGCACGCTGTGGCAAT
LOC_Os02g27400
Os.16914.1.S2_at--125--8671Chr02:16146561..16146585 (25 bp)
TGTGGCAATGGCGTTACTGCATCGA
LOC_Os02g27400
Os.16914.1.S2_at--864--4811Chr02:16146614..16146638 (25 bp)
GCTCTTCCTCCTTTCAGCGATGAAA
LOC_Os02g27400
Os.16914.1.S2_at--459--8851Chr02:16146673..16146697 (25 bp)
TGATCTGGCGACTTCTAAGCTCAAG
LOC_Os02g27400
Os.16914.1.S2_at--642--591Chr02:16146767..16146791 (25 bp)
ATGCCGTTCATCGAAAGTCTCGTTC
LOC_Os02g27400
Os.16914.1.S2_at--321--7171Chr02:16146783..16146807 (25 bp)
GTCTCGTTCGGATCACTTATTAATA
LOC_Os02g27400
Os.16914.1.S2_at--268--10191Chr02:16146800..16146824 (25 bp)
TATTAATAGCCGATCATCGCCCTGT
LOC_Os02g27400
Os.16914.1.S2_at--116--5071Chr02:16146913..16146937 (25 bp)
GCAGCTATTTGCATGTTTATCTATT
LOC_Os02g27400
Target Sequence 
GGATCTGTGTGTGTCGGCGTCTAACACCAGCTGCACGATGCTGAACATATGGACGCTGCCTGTAGCGGACGAGAGCCTGT
GCACGCTGTGGCAATGGCGTTACTGCATCGANTACCCCTGGAGTCTTTGCTCTGTGATGGCTCTTCCTCCTTTCAGCGAT
GAAATCATCTTGTTGCGAGGTAATAATATATGTCGCTATGATCTGGCGACTTCTAAGCTCAAGATACTATGTAGATTGGA
TCGCACGAGGTACCAGGGGGAGGGGGCACGGAAGTCGGAATTGTTCAGTGNCATGCCGTTCATCGAAAGTCTCGTTCGGA
TCACTTATTAATAGCCGATCATCGCCCTGTTCAGTTGGGGCTTTAGCCTTCAGCAGCAAAGCCAGCACAAACAGGATTTT
GTGCCTTNNCNGCTGTCTGCAGCGCTGCCGCAGAATAAGCAGCTATTTGCATGTTTATCTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16914.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis