Browse Element(s) Details


Os.42299.1.S1_x_at

Description gb:NM_190896.1
DB_XREF= gi:34908875
GEN=P0699H05.10
TID=Os.42299.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.42299 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0699H05.10 (P0699H05.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0699H05.10 (P0699H05.10), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g583203/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g58270OsAffx.23836.1.S1_at11/111+34001253..34006565Subtilisin N-terminal Region family protein
LOC_Os01g58280Os.35642.2.S1_x_at11/111+34010031..34015042Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58280Os.48715.1.A1_x_at4/111+34010031..34015042Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58280Os.5139.2.S1_at1/111+34010031..34015042Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58280Os.5139.2.S1_x_at1/111+34010031..34015042Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58290Os.28433.5.S1_x_at11/111+34018642..34023374Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58290Os.28433.4.A1_at10/111+34018642..34023374Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58300OsAffx.26617.1.S1_at10/111+34023403..34024850hypothetical protein
LOC_Os01g58300OsAffx.26617.4.S1_x_at4/111+34023403..34024850hypothetical protein
LOC_Os01g58310Os.28798.1.S1_at11/111+34025976..34026530expressed protein
LOC_Os01g58310Os.42298.1.S1_x_at3/111+34025976..34026530expressed protein
LOC_Os01g58320Os.10196.1.S1_at9/111+34030250..34030708expressed protein
LOC_Os01g58320Os.42299.1.S1_x_at3/111+34030250..34030708expressed protein
LOC_Os01g58330OsAffx.23837.1.S1_at10/111+34031809..34032977hypothetical protein
LOC_Os01g58330Os.6.2.S1_at2/111+34031809..34032977hypothetical protein
LOC_Os01g58340NANA1+34037035..34038059hypothetical protein
LOC_Os01g58350OsAffx.23838.2.S1_at11/111+34040491..34042290hypothetical protein
LOC_Os01g58370OsAffx.11647.1.S1_at11/111+34055156..34055398hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.42299.1.S1_x_at--336--2871Chr01:34030348..34030372 (25 bp)
AAGTGGAGGACTTGCAGGCGCCGCA
LOC_Os01g58320
Os.42299.1.S1_x_at--1020--4511Chr01:34030367..34030391 (25 bp)
GCCGCAGGCGAGGACAGCATACCAT
LOC_Os01g58320
Os.42299.1.S1_x_at--344--3471Chr01:34030371..34030395 (25 bp)
CAGGCGAGGACAGCATACCATTCGG
LOC_Os01g58320
Os.42299.1.S1_x_at--951--8051Chr01:34031132..34031156 (25 bp)
GGAGAGAAGCGCCATTGGCTCCACA
NONE
Os.42299.1.S1_x_at--646--4431Chr01:34031142..34031166 (25 bp)
GCCATTGGCTCCACATCGGGAAGAT
NONE
Os.42299.1.S1_x_at--1093--11Chr01:34031145..34031169 (25 bp)
ATTGGCTCCACATCGGGAAGATGAG
NONE
Os.42299.1.S1_x_at--979--1311Chr01:34031376..34031400 (25 bp)
AGAGGCAACAGGAGCCGCCTTCGGC
NONE
Os.42299.1.S1_x_at--337--7572Chr01:34031417..34031441 (25 bp)
GGGCGTAGCAGATGCCACCAGGACG
NONE
Os.42299.1.S1_x_at--529--3372Chr01:34031459..34031483 (25 bp)
CACCACGCCGGGAGGAAGAGCAGCA
NONE
Os.42299.1.S1_x_at--139--5051Chr01:34031502..34031526 (25 bp)
GCAGCAGCCGCCAGGGCTTAGGATT
NONE
Os.42299.1.S1_x_at--400--4411Chr01:34031511..34031535 (25 bp)
GCCAGGGCTTAGGATTCGAGGAGAC
NONE
Target Sequence 
AAGTGGAGGACTTGCAGGCGCCGCAGGCGAGGACAGCATACCATTCGGGGCCGGAGTCGGCCCGCGCGGCCTCAGCAGCG
GTACGTGGGCCGCATGGTCCGCCTCCTCGCTGCTCGCCGCGAGGAGAGAAGCGCCATTGGCTCCACATCGGGAAGATGAG
GGGGCAGCTGGGAAGGAGGGGGCGGCGGGCAGCTGCTTCCACCACGCCGGGGGAGGGAAGCAGCCGCCACAGCCGCCGTC
GCCATGCCGGGAAGGGGGAGGAGGGAAGCAACCGCCGCCGCTGCCGCCACACTCCCACACCGGGGAGAGGCAACAGGAGC
CGCCTTCGGCTCCACGTCGGGGAGGGGGGCGTAGCAGATGCCACCAGGACGGGGAGGGGAGCAGCCGCCACCACGCCGGG
AGGAAGAGCAGCAGCCACCGCCAGGGAGGGAGCAGCAGCCGCCAGGGCTTAGGATTCGAGGAGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.42299.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis