Browse Element(s) Details


OsAffx.23838.2.S1_at

Description tigr:9629.m05725
TID=OsAffx.23838.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5835011/11hypothetical protein
LOC_Os03g224301/11ATP-dependent Clp protease proteolytic subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g58290Os.28433.5.S1_x_at11/111+34018642..34023374Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58290Os.28433.4.A1_at10/111+34018642..34023374Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58300OsAffx.26617.1.S1_at10/111+34023403..34024850hypothetical protein
LOC_Os01g58300OsAffx.26617.4.S1_x_at4/111+34023403..34024850hypothetical protein
LOC_Os01g58310Os.28798.1.S1_at11/111+34025976..34026530expressed protein
LOC_Os01g58310Os.42298.1.S1_x_at3/111+34025976..34026530expressed protein
LOC_Os01g58320Os.10196.1.S1_at9/111+34030250..34030708expressed protein
LOC_Os01g58320Os.42299.1.S1_x_at3/111+34030250..34030708expressed protein
LOC_Os01g58330OsAffx.23837.1.S1_at10/111+34031809..34032977hypothetical protein
LOC_Os01g58330Os.6.2.S1_at2/111+34031809..34032977hypothetical protein
LOC_Os01g58340NANA1+34037035..34038059hypothetical protein
LOC_Os01g58350OsAffx.23838.2.S1_at11/111+34040491..34042290hypothetical protein
LOC_Os01g58370OsAffx.11647.1.S1_at11/111+34055156..34055398hypothetical protein
LOC_Os01g58380Os.9992.1.S1_a_at11/111+34057226..340598583-hydroxybutyryl-CoA dehydrogenase, putative, expressed
LOC_Os01g58390Os.45906.1.S1_at6/111+34060342..34062309HAD superfamily phosphatase, TIGR01668 containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006510biological_processATP-dependent proteolysis
GO:0005739cellular_componentmitochondrion
GO:0005759cellular_componentmitochondrial matrix
GO:0009534cellular_componentthylakoid (sensu Viridiplantae)
GO:0009535cellular_componentthylakoid membrane (sensu Viridiplantae)
GO:0009570cellular_componentchloroplast stroma
GO:0009840cellular_componentchloroplastic endopeptidase Clp complex
GO:0008462molecular_functionendopeptidase Clp activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23838.2.S1_at--589--1611Chr01:34041813..34041952 (25 bp)
AGCGGCGTTGCAAGCCCTAGCCTAA
LOC_Os01g58350
OsAffx.23838.2.S1_at--241--2672Chr11:3141973..3142002 (25 bp)
AAGCCCTAGCCTAATCAGTGCAAAA
NONE
OsAffx.23838.2.S1_at--431--5513Chr11:13439039..13439436 (25 bp)
GAAAAGAGAGGCAACCTACCAGGGA
NONE
OsAffx.23838.2.S1_at--934--3713Chr11:13439427..13439451 (25 bp)
CTACCAGGGAGAGGCTTTACACATG
NONE
OsAffx.23838.2.S1_at--289--6214Chr11:13439437..13439460 (24 bp)
GAGGCTTTACACATGAGAAATTTCT
NONE
OsAffx.23838.2.S1_at--698--7691Chr01:34042039..34042063 (25 bp)
GGGTCTCTGGCGAGCGGCGAGGCAA
LOC_Os01g58350
OsAffx.23838.2.S1_at--698--4611Chr01:34042066..34042090 (25 bp)
GCGACCTCCCATGGAGAGGCGACAG
LOC_Os01g58350
OsAffx.23838.2.S1_at--84--3811Chr01:34042071..34042095 (25 bp)
CTCCCATGGAGAGGCGACAGGTCAG
LOC_Os01g58350
OsAffx.23838.2.S1_at--778--44531Chr12:5789412..5789433 (22 bp)
GCCTATAAAATGTTCGAGCTTTCAA
NONE
OsAffx.23838.2.S1_at--1061--5672Chr07:13750..13774 (25 bp)
GAGCTTTCAAACAGGTTCGGTTCGA
NONE
OsAffx.23838.2.S1_at--1162--10472Chr07:13755..13779 (25 bp)
TTCAAACAGGTTCGGTTCGAGCTCG
NONE
Target Sequence 
AGCGGCGTTGCAAGCCCTAGCCTAATCAGTGCAAAAAATTGGAAAAGAGAGGCAACCTACCAGGGAGAGGCTTTACACAT
GAGAAATTTCTCCGATTGGGGCTGTCGGGCTGGGTCTCTGGCGAGCGGCGAGGCAAGGGCGACCTCCCATGGAGAGGCGA
CAGGTCAGACGAGAGCGAGGAGAGAGATTGGAAGTCGAGGTAGGGCTGTCAACGAGCCGAGCTCGAGCGAGCTCGCCTGC
CTAGGCTCGAGCTCGATTAAAGCTCGAGCCGAGCCGAGCTCAAGCCGAGCCTATAAAATGTTCGAGCTTTCAAACAGGTT
CGGTTCGAGCTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23838.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis