Browse Element(s) Details


Os.28798.1.S1_at

Description gb:AK111059.1
DB_XREF= gi:32996268
TID=Os.28798.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28798 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0699H05.9 (P0699H05.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-175-D05, full insert sequence.
FL= gb:AK111059.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5831011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g58270OsAffx.23836.1.S1_at11/111+34001253..34006565Subtilisin N-terminal Region family protein
LOC_Os01g58280Os.35642.2.S1_x_at11/111+34010031..34015042Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58280Os.48715.1.A1_x_at4/111+34010031..34015042Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58280Os.5139.2.S1_at1/111+34010031..34015042Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58280Os.5139.2.S1_x_at1/111+34010031..34015042Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58290Os.28433.5.S1_x_at11/111+34018642..34023374Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58290Os.28433.4.A1_at10/111+34018642..34023374Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58300OsAffx.26617.1.S1_at10/111+34023403..34024850hypothetical protein
LOC_Os01g58300OsAffx.26617.4.S1_x_at4/111+34023403..34024850hypothetical protein
LOC_Os01g58310Os.28798.1.S1_at11/111+34025976..34026530expressed protein
LOC_Os01g58310Os.42298.1.S1_x_at3/111+34025976..34026530expressed protein
LOC_Os01g58320Os.10196.1.S1_at9/111+34030250..34030708expressed protein
LOC_Os01g58320Os.42299.1.S1_x_at3/111+34030250..34030708expressed protein
LOC_Os01g58330OsAffx.23837.1.S1_at10/111+34031809..34032977hypothetical protein
LOC_Os01g58330Os.6.2.S1_at2/111+34031809..34032977hypothetical protein
LOC_Os01g58340NANA1+34037035..34038059hypothetical protein
LOC_Os01g58350OsAffx.23838.2.S1_at11/111+34040491..34042290hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28798.1.S1_at--537--632Chr01:34026304..34026328 (25 bp)
ATGCTCTTGTAGCTCCGCTTCATGG
LOC_Os01g58310
Os.28798.1.S1_at--4--6971Chr01:34026312..34026336 (25 bp)
GTAGCTCCGCTTCATGGAATACAAT
LOC_Os01g58310
Os.28798.1.S1_at--872--8211Chr01:34026327..34026351 (25 bp)
GGAATACAATACATGATGCTTCGTG
LOC_Os01g58310
Os.28798.1.S1_at--570--6331Chr01:34026341..34026365 (25 bp)
GATGCTTCGTGTATATAAGTGACTT
LOC_Os01g58310
Os.28798.1.S1_at--1152--9752Chr01:34026356..34026380 (25 bp)
TAAGTGACTTGTGTGATGTGGTTGT
LOC_Os01g58310
Os.28798.1.S1_at--621--10651Chr01:34026404..34026428 (25 bp)
TTCCGGAAAATGTCCGGGCTGTCGT
LOC_Os01g58310
Os.28798.1.S1_at--651--4731Chr01:34026421..34026445 (25 bp)
GCTGTCGTCATGATCGGCAAGGAGA
LOC_Os01g58310
Os.28798.1.S1_at--962--2851Chr01:34026453..34026477 (25 bp)
AAGTGTGATTAACTGTTCGTTGTAA
LOC_Os01g58310
Os.28798.1.S1_at--406--6711Chr01:34026467..34026491 (25 bp)
GTTCGTTGTAAATTAAGCTCGTGAG
LOC_Os01g58310
Os.28798.1.S1_at--360--1591Chr01:34026482..34026506 (25 bp)
AGCTCGTGAGATTTGCAGTTCCGTA
LOC_Os01g58310
Os.28798.1.S1_at--904--5031Chr01:34026496..34026520 (25 bp)
GCAGTTCCGTAATTGATGATTCTTT
LOC_Os01g58310
Target Sequence 
ATGCTCTTGTAGCTCCGCTTCATGGAATACAATACATGATGCTTCGTGTATATAAGTGACTTGTGTGATGTGGTTGTGCA
GTGGCCACAGGGGATGAGTTTTCCGGAAAATGTCCGGGCTGTCGTCATGATCGGCAAGGAGACGAGGAAAAGTGTGATTA
ACTGTTCGTTGTAAATTAAGCTCGTGAGATTTGCAGTTCCGTAATTGATGATTCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28798.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis