Browse Element(s) Details


Os.50275.1.S1_at

Description gb:AK120491.1
DB_XREF= gi:37990114
TID=Os.50275.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50275 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013119G16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013119G16, full insert sequence.
FL= gb:AK120491.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5840011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g58370OsAffx.11647.1.S1_at11/111+34055156..34055398hypothetical protein
LOC_Os01g58380Os.9992.1.S1_a_at11/111+34057226..340598583-hydroxybutyryl-CoA dehydrogenase, putative, expressed
LOC_Os01g58390Os.45906.1.S1_at6/111+34060342..34062309HAD superfamily phosphatase, TIGR01668 containing protein
LOC_Os01g58400Os.50275.1.S1_at11/111+34067498..34072706Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g58410NANA1+34074835..34077087hypothetical protein
LOC_Os01g58420Os.3766.1.S1_at11/111+34093832..34094932AP2 domain containing protein, expressed
LOC_Os01g58430OsAffx.23839.1.S1_at11/111+34097009..34097629hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50275.1.S1_at--423--9791Chr01:34068262..34068286 (25 bp)
TAAGTTGTCGACCAACCTTGTCCAT
LOC_Os01g58400
Os.50275.1.S1_at--1114--2631Chr01:34068249..34068273 (25 bp)
AACCTTGTCCATTCGGCATCTTGTA
LOC_Os01g58400
Os.50275.1.S1_at--591--4971Chr01:34068143..34068258 (25 bp)
GCATCTTGTACAGTTCATTGCTCTG
LOC_Os01g58400
Os.50275.1.S1_at--143--3151Chr01:34067831..34067855 (25 bp)
AATTGCTGTATGCTTTGAAAACTCA
LOC_Os01g58400
Os.50275.1.S1_at--177--6451Chr01:34067800..34067824 (25 bp)
GATCAGAATTTCTTGACACCGCATT
LOC_Os01g58400
Os.50275.1.S1_at--622--3591Chr01:34067779..34067803 (25 bp)
CATTCGTCACTGTCGTTACAGAGGT
LOC_Os01g58400
Os.50275.1.S1_at--683--1331Chr01:34067760..34067784 (25 bp)
AGAGGTACATCTGGCCATTCGGGCT
LOC_Os01g58400
Os.50275.1.S1_at--32--4451Chr01:34067747..34067771 (25 bp)
GCCATTCGGGCTCAGTCTGGTGAAA
LOC_Os01g58400
Os.50275.1.S1_at--992--1531Chr01:34067708..34067732 (25 bp)
AGCATTCTAGTGGTTCTCTTTCTTT
LOC_Os01g58400
Os.50275.1.S1_at--791--10351Chr01:34067565..34067589 (25 bp)
TTTATTCATTTGTACCAGTTTGCTG
LOC_Os01g58400
Os.50275.1.S1_at--126--10251Chr01:34067503..34067527 (25 bp)
TTTGTTATTCGCTTGTTCAGGCCTT
LOC_Os01g58400
Target Sequence 
TAAGTTGTCGACCAACCTTGTCCATTCGGCATCTTGTACAGTTCATTGCTCTGCAGTTGTCTCGGCAAGTTGAAGAACTT
GATATCTTTATGAGGATAGACCACTGCAATGGAAGTGTTACAACACAGGACTGCACTACAGGTGTTGCAAAAATGCGTTT
ATCTGATGGCCTGGAAAGAATAAGGGAGGATAAACTTCTTTCAGAGCTTCATCCTTCTTTTACTTCTCATCACGGTGATC
TGGAATTGCTGTATGCTTTGAAAACTCAAGGCTAGATCAGAATTTCTTGACACCGCATTCGTCACTGTCGTTACAGAGGT
ACATCTGGCCATTCGGGCTCAGTCTGGTGAAAGGTTGTATATAAAAAGCATTCTAGTGGTTCTCTTTCTTTTTTCGTGAT
GTTTAAAATATAATTCGATTACTTTGTAATATATAGATTTTCATTGTTTGCAAGGATCAGTTGAATTTATTAGCGATTTT
TATAAATAGACTAAGTAAATATCCTTCTGTTTATTCATTTGTACCAGTTTGCTGGATCATGGATAGTAGTAGATTGTTGC
GGTAAAATCTATTTGTTATTCGCTTGTTCAGGCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50275.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis