Browse Element(s) Details


Os.3766.1.S1_at

Description gb:AK069262.1
DB_XREF= gi:32979286
TID=Os.3766.1
CNT=23
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.3766 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) ethylene-responsive element binding factor 3 (P0699H05.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023010G17, full insert sequence.
FL= gb:AB037183.1 gb:AB036883.1 gb:AK061380.1 gb:AK069262.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5842011/11AP2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g58400Os.50275.1.S1_at11/111+34067498..34072706Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g58410NANA1+34074835..34077087hypothetical protein
LOC_Os01g58420Os.3766.1.S1_at11/111+34093832..34094932AP2 domain containing protein, expressed
LOC_Os01g58430OsAffx.23839.1.S1_at11/111+34097009..34097629hypothetical protein
LOC_Os01g58440Os.50619.1.S1_x_at11/111+34105154..34106470expressed protein
LOC_Os01g58440Os.50619.1.S1_at11/111+34105154..34106470expressed protein
LOC_Os01g58450OsAffx.9495.1.S1_at10/111+34115539..34116995retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g58450OsAffx.21754.1.S1_x_at2/111+34115539..34116995retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g58459Os.7853.1.S1_at11/111+34117138..34120938expressed protein
LOC_Os01g58459Os.7853.1.S2_a_at11/111+34117138..34120938expressed protein
LOC_Os01g58459Os.7853.2.S1_x_at10/111+34117138..34120938expressed protein
LOC_Os01g58459Os.51796.1.S1_at7/111+34117138..34120938expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009864biological_processinduced systemic resistance, jasmonic acid mediated signaling pathway
GO:0009873biological_processethylene mediated signaling pathway
GO:0010105biological_processnegative regulation of ethylene mediated signaling pathway
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
GO:0016564molecular_functiontranscriptional repressor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3766.1.S1_at--750--4511Chr01:34094299..34094323 (25 bp)
GCCGACTCTGGACTTGGATTTGTTC
LOC_Os01g58420
Os.3766.1.S1_at--643--5671Chr01:34094309..34094333 (25 bp)
GACTTGGATTTGTTCCACCGCGCGG
LOC_Os01g58420
Os.3766.1.S1_at--1158--10511Chr01:34094375..34094399 (25 bp)
TTCAGAGGATATCCCGTTGCACGTC
LOC_Os01g58420
Os.3766.1.S1_at--239--1491Chr01:34094401..34094425 (25 bp)
AGCAACGCATCCTTACTTTTTCTAT
LOC_Os01g58420
Os.3766.1.S1_at--810--9891Chr01:34094414..34094438 (25 bp)
TACTTTTTCTATGAGCAGGCTGCAG
LOC_Os01g58420
Os.3766.1.S1_at--712--3391Chr01:34094448..34094472 (25 bp)
CAGCTGAGGCTGGATACCGTATGAT
LOC_Os01g58420
Os.3766.1.S1_at--281--8851Chr01:34094469..34094493 (25 bp)
TGATGAAGCTTGCACCGCCGGTCAC
LOC_Os01g58420
Os.3766.1.S1_at--700--7191Chr01:34094530..34094554 (25 bp)
GTCGGTGGTTGATCTCGCGCCGTCA
LOC_Os01g58420
Os.3766.1.S1_at--616--10611Chr01:34094588..34094612 (25 bp)
TTCGATCTGGATCTGAACCGGCCGC
LOC_Os01g58420
Os.3766.1.S1_at--45--6251Chr01:34094682..34094706 (25 bp)
GATGGATATTTCTCTCCGATGTTTT
LOC_Os01g58420
Os.3766.1.S1_at--727--1671Chr01:34094730..34094754 (25 bp)
AGCCTGTGAGAGACGGAAGAGCCTT
LOC_Os01g58420
Target Sequence 
GCCGACTCTGGACTTGGATTTGTTCCACCGCGCGGCTGCTGTGACTGCAGTCGCCGGCACCGGCGTTCGCTTTCCNTTTC
AGAGGATATCCCGTTGCACGTCCAGCAACGCATCCTTACTTTTTCTATGAGCAGGCTGCAGCGGCTGCCGCAGCTGAGGC
TGGATACCGTATGATGAAGCTTGCACCGCCGGTCACCGTGGCGGCGGTTGCACAAAGTGACTCCGACTCCTCGTCGGTGG
TTGATCTCGCGCCGTCACCTCCAGCGGTTACGGCGAACAAGGCGGCAGCTTTCGATCTGGATCTGAACCGGCCGCCGCCG
GTAGAGAACTAGCTCAGGATGGGTTAGCTGACGACTTTGTAGTTTCTCTCTTATTTTCTTCTTTGATGGATATTTCTCTC
CGATGTTTTGGTCCTCTGTGTTTTTGTTTAGTAGCCTGTGAGAGACGGAAGAGCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3766.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis