Browse Element(s) Details


OsAffx.9495.1.S1_at

Description gb:NM_190909.1
DB_XREF= gi:34908901
GEN=P0699H05.23
TID=OsAffx.9495.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0699H05.23 (P0699H05.23), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5845010/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g58420Os.3766.1.S1_at11/111+34093832..34094932AP2 domain containing protein, expressed
LOC_Os01g58430OsAffx.23839.1.S1_at11/111+34097009..34097629hypothetical protein
LOC_Os01g58440Os.50619.1.S1_x_at11/111+34105154..34106470expressed protein
LOC_Os01g58440Os.50619.1.S1_at11/111+34105154..34106470expressed protein
LOC_Os01g58450OsAffx.9495.1.S1_at10/111+34115539..34116995retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g58450OsAffx.21754.1.S1_x_at2/111+34115539..34116995retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g58459Os.7853.1.S1_at11/111+34117138..34120938expressed protein
LOC_Os01g58459Os.7853.1.S2_a_at11/111+34117138..34120938expressed protein
LOC_Os01g58459Os.7853.2.S1_x_at10/111+34117138..34120938expressed protein
LOC_Os01g58459Os.51796.1.S1_at7/111+34117138..34120938expressed protein
LOC_Os01g58470Os.27717.1.S1_a_at11/111+34130010..34132240expressed protein
LOC_Os01g58480OsAffx.23840.1.S1_at11/111+34136537..34137863hypothetical protein
LOC_Os01g58490OsAffx.23841.1.S1_at11/111+34138781..34139359hypothetical protein
LOC_Os01g58500Os.36178.1.S1_at10/111+34139763..34141975expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9495.1.S1_at--313--891Chr01:34115580..34115604 (25 bp)
AGGCCCGCCCAACTATCTGAGGCAG
LOC_Os01g58450
OsAffx.9495.1.S1_at--1006--1051NONE
AGGGGCGTGGATCCGACTACTCCAT
NONE
OsAffx.9495.1.S1_at--1086--9031Chr01:34116658..34116682 (25 bp)
TGCAGCCCGCGTCCAGACGAGAGCT
LOC_Os01g58450
OsAffx.9495.1.S1_at--518--4651Chr01:34116666..34116690 (25 bp)
GCGTCCAGACGAGAGCTGTATGGCT
LOC_Os01g58450
OsAffx.9495.1.S1_at--594--1871Chr01:34116674..34116698 (25 bp)
ACGAGAGCTGTATGGCTCGGCCGAC
LOC_Os01g58450
OsAffx.9495.1.S1_at--1018--7591Chr01:34116876..34116899 (24 bp)
GGGCAGGGCGGTGTGTCCAGAGCAA
LOC_Os01g58450
OsAffx.9495.1.S1_at--139--8711Chr01:34116888..34116912 (25 bp)
TGTCCAGAGCAAAGGGCCGCACGGT
LOC_Os01g58450
OsAffx.9495.1.S1_at--132--4231Chr01:34116904..34116928 (25 bp)
CCGCACGGTGGGTGGCAGGTTGGCA
LOC_Os01g58450
OsAffx.9495.1.S1_at--183--4571Chr01:34116930..34116954 (25 bp)
GCGCCGCTGGGCACAGAATGCAGCA
LOC_Os01g58450
OsAffx.9495.1.S1_at--770--3891Chr01:34116936..34116960 (25 bp)
CTGGGCACAGAATGCAGCACAAAGG
LOC_Os01g58450
OsAffx.9495.1.S1_at--612--5051Chr01:34116949..34116973 (25 bp)
GCAGCACAAAGGCTTTATTAACGGT
LOC_Os01g58450
Target Sequence 
AGGCCCGCCCAACTATCTGAGGCAGCGCCGCGAGGGGCGTGGATCCGACTACTCCATCCCGCTCGCCGACGTGCACCTGA
GATCGGGAGAGCAGGTCTCCGGAACATCTGCCTTCGACGTCCTGAACCGGGAGAAGGCGGCAATAAGGTTTTTGGGACCG
CCACCTCGGACCTACCGGACTCTGACGCGCACGCTACCCCAGGCACACGTCCCATCGCTGCAGCCCGCGTCCAGACGAGA
GCTGTATGGCTCGGCCGACGCCGACGCCGACGCTCGCCCGACCCACACCGCGCGATTCGATTCGCACGCCCACGCCCACG
CACTTCCCGCCGCTCGCGGGCAGGGCGGTGTGTCCAGAGCAAAGGGCCGCACGGTGGGTGGCAGGTTGGCAGGCGCCGCT
GGGCACAGAATGCAGCACAAAGGCTTTATTAACGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9495.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis