Browse Element(s) Details


OsAffx.23840.1.S1_at

Description tigr:9629.m05738
TID=OsAffx.23840.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5848011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g58450OsAffx.9495.1.S1_at10/111+34115539..34116995retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g58450OsAffx.21754.1.S1_x_at2/111+34115539..34116995retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g58459Os.7853.1.S1_at11/111+34117138..34120938expressed protein
LOC_Os01g58459Os.7853.1.S2_a_at11/111+34117138..34120938expressed protein
LOC_Os01g58459Os.7853.2.S1_x_at10/111+34117138..34120938expressed protein
LOC_Os01g58459Os.51796.1.S1_at7/111+34117138..34120938expressed protein
LOC_Os01g58470Os.27717.1.S1_a_at11/111+34130010..34132240expressed protein
LOC_Os01g58480OsAffx.23840.1.S1_at11/111+34136537..34137863hypothetical protein
LOC_Os01g58490OsAffx.23841.1.S1_at11/111+34138781..34139359hypothetical protein
LOC_Os01g58500Os.36178.1.S1_at10/111+34139763..34141975expressed protein
LOC_Os01g58510OsAffx.23842.1.S1_at11/111+34142253..34143446NB-ARC domain containing protein, expressed
LOC_Os01g58510OsAffx.23842.3.S1_x_at1/111+34142253..34143446NB-ARC domain containing protein, expressed
LOC_Os01g58520Os.25235.1.A1_at11/111+34143539..34145585Leucine Rich Repeat family protein, expressed
LOC_Os01g58530Os.26785.2.S1_at11/111+34152430..34155661Leucine Rich Repeat family protein, expressed
LOC_Os01g58530Os.26785.1.A1_at11/111+34152430..34155661Leucine Rich Repeat family protein, expressed
LOC_Os01g58540OsAffx.21684.1.S1_at11/111+34159008..34159987hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23840.1.S1_at--971--6211Chr01:34136663..34136687 (25 bp)
GATGGCGTCAAGTGCACCGCCTTGT
LOC_Os01g58480
OsAffx.23840.1.S1_at--96--6991Chr01:34136692..34136716 (25 bp)
GTACCTCCCTCGACTGTTGAAGAAG
LOC_Os01g58480
OsAffx.23840.1.S1_at--331--5371Chr01:34136788..34136812 (25 bp)
GAAGAAGGAGGTGCCTAGCGCTCCC
LOC_Os01g58480
OsAffx.23840.1.S1_at--575--9451Chr01:34136882..34136906 (25 bp)
TCGGCGTCGTCAAAGCTCCGCGAGG
LOC_Os01g58480
OsAffx.23840.1.S1_at--561--10571Chr01:34136930..34136954 (25 bp)
TTCTCGTTCTCGCACTGGAGCCGGT
LOC_Os01g58480
OsAffx.23840.1.S1_at--467--8091Chr01:34136946..34136970 (25 bp)
GGAGCCGGTCTCAGGCATCTCGAGT
LOC_Os01g58480
OsAffx.23840.1.S1_at--1116--911Chr01:34136958..34136982 (25 bp)
AGGCATCTCGAGTCAGGCCACACGG
LOC_Os01g58480
OsAffx.23840.1.S1_at--458--2011Chr01:34137713..34137737 (25 bp)
ACTCTATTCTAGTTCCCACGAGGGA
LOC_Os01g58480
OsAffx.23840.1.S1_at--763--4351Chr01:34137728..34137752 (25 bp)
CCACGAGGGATTACACTATCTTCAA
LOC_Os01g58480
OsAffx.23840.1.S1_at--939--2311Chr01:34137751..34137775 (25 bp)
AAAGATATCTTCAGCTATACCCACC
LOC_Os01g58480
OsAffx.23840.1.S1_at--1062--2791Chr01:34137778..34137802 (25 bp)
AAGATGCTATCACAATTCGCAGGAA
LOC_Os01g58480
Target Sequence 
GATGGCGTCAAGTGCACCGCCTTGTGCCTGTACCTCCCTCGACTGTTGAAGAAGAAGCGGGCAGCTGTGCAGCCGGCCAC
CATGAGCGCCGCGCCCACAAGCGCGCAGAAGGCGAAGGCGAAGGCGAAGAAGGAGGTGCCTAGCGCTCCCCGTGTCTCGT
CGCGGTGGCCGTCGTCACTTCCCCGCGCTGTCTCCGCCGGTGCGGCGGGCAGGACGTCGTCGGCGTCGTCAAAGCTCCGC
GAGGCGTCGGCGTCGGCGTCGGCGTCGTTCTCGTTCTCGCACTGGAGCCGGTCTCAGGCATCTCGAGTCAGGCCACACGG
CGCGGCGCCGGGCCCGTTCTCCTTCCCGTCGTCGCCGGCGTCCGCGTCGTCTGGCACGAGCACGCCGAAGCTAGCGCACG
GGGGAATACTCACAGAACTATTAGGACTACTCTATTCTAGTTCCCACGAGGGATTACACTATCTTCAAAGATATCTTCAG
CTATACCCACCAAAAGATGCTATCACAATTCGCAGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23840.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis