Browse Element(s) Details


OsAffx.23842.3.S1_x_at

Description tigr:9635.m00546
TID=OsAffx.23842.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g719504/11hypothetical protein
LOC_Os01g585101/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g71910Os.45976.1.S1_x_at3/111+41992265..41995947transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g71930Os.52384.1.A1_at11/111+42004732..42008652beta-1,3-glucanase precursor, putative, expressed
LOC_Os01g71930OsAffx.2448.1.S1_at1/111+42004732..42008652beta-1,3-glucanase precursor, putative, expressed
LOC_Os01g71940OsAffx.11821.1.S1_at11/111+42008766..42011226hypothetical protein
LOC_Os01g71950OsAffx.23842.2.S1_x_at11/111+42015240..42017005hypothetical protein
LOC_Os01g71950Os.36178.2.S1_at5/111+42015240..42017005hypothetical protein
LOC_Os01g71950OsAffx.23842.3.S1_x_at4/111+42015240..42017005hypothetical protein
LOC_Os01g71960Os.57379.1.S1_at11/111+42018023..42025538ERCC4 domain containing protein, expressed
LOC_Os01g71970OsAffx.27559.1.S1_x_at11/111+42038755..42040660GRAS family transcription factor containing protein, expressed
LOC_Os01g71970OsAffx.27559.2.S1_x_at1/111+42038755..42040660GRAS family transcription factor containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23842.3.S1_x_at--912--8912Chr07:2942256..2942384 (25 bp)
TGAGCTCCGGCAGTGTCTCTTGAAG
NONE
OsAffx.23842.3.S1_x_at--652--4792Chr07:2942259..2942387 (25 bp)
GCTCCGGCAGTGTCTCTTGAAGAAG
NONE
OsAffx.23842.3.S1_x_at--1050--9572Chr07:2942378..2942401 (24 bp)
TCTTGAAGAAGAGGGTGATCGCCGT
NONE
OsAffx.23842.3.S1_x_at--309--3251Chr07:2942402..2942426 (25 bp)
CAAGCGCCGAGTTCTGCGGTGCGTC
NONE
OsAffx.23842.3.S1_x_at--675--3831Chr07:2942415..2942439 (25 bp)
CTGCGGTGCGTCGAGAGCGATTCCA
NONE
OsAffx.23842.3.S1_x_at--398--92Chr07:2942434..2942458 (25 bp)
ATTCCAGCGGCGTTGGCGGCAACGC
NONE
OsAffx.23842.3.S1_x_at--1131--512Chr07:2942529..2942553 (25 bp)
ATCGAAGAGGGCACCGTCCACGGGT
NONE
OsAffx.23842.3.S1_x_at--188--9711Chr07:2942671..2942695 (25 bp)
TCAACAGCCTGCAGGCCAGGCGACG
NONE
OsAffx.23842.3.S1_x_at--274--2491Chr07:2942673..2942697 (25 bp)
AACAGCCTGCAGGCCAGGCGACGAG
NONE
OsAffx.23842.3.S1_x_at--36--3391Chr07:2942675..2942699 (25 bp)
CAGCCTGCAGGCCAGGCGACGAGGA
NONE
OsAffx.23842.3.S1_x_at--633--4471Chr07:2942677..2942701 (25 bp)
GCCTGCAGGCCAGGCGACGAGGAGA
NONE
Target Sequence 
TGAGCTCCGGCAGTGTCTCTTGAAGAAGAGGGTGATCGCCGTCAAGCGCCGAGTTCTGCGGTGCGTCGAGAGCGATTCCA
GCGGCGTTGGCGGCAACGCCGCTGTCGCCGCAGCCTTGGAGGAGGAGGACAGCGCCGCCACGGGCTTCAGCCGGTGGACC
TCCTCCTGGATCGAAGAGGGCACCGTCCACGGGTTCGACCAGCAGCTCGCCGAGCTGGAATCCATGGCGGAGTGCGGCGC
CGGAGGACTTACCGGCGTCGGCATCGTCGGCATGGCTGGCGTCGGGAAGACCGCGCTCGCGCAGCTCGTGTTCAACAGCC
TGCAGGCCAGGCGACGAGGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23842.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis