Browse Element(s) Details


Os.57379.1.S1_at

Description gb:AK111411.1
DB_XREF= gi:32996620
TID=Os.57379.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57379 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-182-F04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-182-F04, full insert sequence.
FL= gb:AK111411.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7196011/11ERCC4 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g71910Os.45976.1.S1_x_at3/111+41992265..41995947transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g71930Os.52384.1.A1_at11/111+42004732..42008652beta-1,3-glucanase precursor, putative, expressed
LOC_Os01g71930OsAffx.2448.1.S1_at1/111+42004732..42008652beta-1,3-glucanase precursor, putative, expressed
LOC_Os01g71940OsAffx.11821.1.S1_at11/111+42008766..42011226hypothetical protein
LOC_Os01g71950OsAffx.23842.2.S1_x_at11/111+42015240..42017005hypothetical protein
LOC_Os01g71950Os.36178.2.S1_at5/111+42015240..42017005hypothetical protein
LOC_Os01g71950OsAffx.23842.3.S1_x_at4/111+42015240..42017005hypothetical protein
LOC_Os01g71960Os.57379.1.S1_at11/111+42018023..42025538ERCC4 domain containing protein, expressed
LOC_Os01g71970OsAffx.27559.1.S1_x_at11/111+42038755..42040660GRAS family transcription factor containing protein, expressed
LOC_Os01g71970OsAffx.27559.2.S1_x_at1/111+42038755..42040660GRAS family transcription factor containing protein, expressed
LOC_Os01g71980OsAffx.24009.1.S1_at11/111+42042884..42045449Rho-GTPase-activating protein, putative, expressed
LOC_Os01g71980Os.6018.1.S1_at11/111+42042884..42045449Rho-GTPase-activating protein, putative, expressed
LOC_Os01g71990Os.49684.1.S1_x_at11/111+42045488..42048420Pyrroline-5-carboxylate reductase, putative, expressed
LOC_Os01g71990Os.49684.2.S1_at11/111+42045488..42048420Pyrroline-5-carboxylate reductase, putative, expressed
LOC_Os01g71990Os.49684.1.S1_at10/111+42045488..42048420Pyrroline-5-carboxylate reductase, putative, expressed
LOC_Os01g72000Os.7012.1.S1_at11/111+42049276..42053045Armadillo/beta-catenin-like repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006281biological_processDNA repair
GO:0003676molecular_functionnucleic acid binding
GO:0004519molecular_functionendonuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57379.1.S1_at--835--1951Chr01:42024667..42024691 (25 bp)
ACTGTGAGTGATGTATTCGCCCTTC
LOC_Os01g71960
Os.57379.1.S1_at--858--91Chr01:42024681..42024704 (24 bp)
ATTCGCCCTTCAACTTATGCAGGTG
LOC_Os01g71960
Os.57379.1.S1_at--817--5111Chr01:42024831..42024855 (25 bp)
GCACTTGCTGTGATAGGGCTCTATC
LOC_Os01g71960
Os.57379.1.S1_at--981--2451Chr01:42024857..42024881 (25 bp)
AACTCTTTTCTCACTTGCTAAGGCG
LOC_Os01g71960
Os.57379.1.S1_at--1005--891Chr01:42024877..42025104 (25 bp)
AGGCGTACTCTATGCTTGATGGTGA
LOC_Os01g71960
Os.57379.1.S1_at--1015--7751Chr01:42025100..42025124 (25 bp)
GGTGATACCCATGCCCAAGAGAAGA
LOC_Os01g71960
Os.57379.1.S1_at--693--7371Chr01:42025259..42025283 (25 bp)
GTGACTCTGATGGATCCACCAGTGA
LOC_Os01g71960
Os.57379.1.S1_at--402--1231Chr01:42025299..42025323 (25 bp)
AGTTCTCACTGCAACTCTTTCATGT
LOC_Os01g71960
Os.57379.1.S1_at--481--2831Chr01:42025401..42025425 (25 bp)
AAGTTAGCTTATCCGCGTAGGTTCA
LOC_Os01g71960
Os.57379.1.S1_at--1112--431Chr01:42025448..42025472 (25 bp)
ATCTTTTGTAGACTCCAGGTTGTAC
LOC_Os01g71960
Os.57379.1.S1_at--573--9991Chr01:42025503..42025527 (25 bp)
TAGCGTTTCACATCTGTTTACTCGG
LOC_Os01g71960
Target Sequence 
ACTGTGAGTGATGTATTCGCCCTTCAACTTATGCAGGTGCCACAAGTGACAGAAGAAGCTGCACTTGCTGTGATAGGGCT
CTATCCAACTCTTTTCTCACTTGCTAAGGCGTACTCTATGCTTGATGGTGATACCCATGCCCAAGAGAAGATGTTGAAGA
ACAAGAGCACGCTGATAAATGCAGGGGCTAGCAGAAACATATTCAAGCTTGTCTGGGCTGAAGGATAAATTCTTCAGTTT
ATTTTCCGATTAACTGGTTTAACCATTTTTTTGGTCATCTTCTTGGTGACTCTGATGGATCCACCAGTGAAGCTCCCCAA
TTCTCAGTTCTCACTGCAACTCTTTCATGTCCTGAAGGCAAACGGGGTCCTTTTTTGTGTGCCAAGGTGCCATGGAACAC
AACTAACCACCTACATAGGGACTTTGCAAGTTAGCTTATCCGCGTAGGTTCACCCCCATCTAGGTAGACTAATTATCTTT
TGTAGACTCCAGGTTGTACAAAATGGAATTATCATGGAACGGGGCCGTTTAGCGTTTCACATCTGTTTACTCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57379.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis