Browse Element(s) Details


Os.7012.1.S1_at

Description gb:AK119342.1
DB_XREF= gi:37988965
TID=Os.7012.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.7012 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-131-D10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-131-D10, full insert sequence.
FL= gb:AK119342.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7200011/11Armadillo/beta-catenin-like repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g71960Os.57379.1.S1_at11/111+42018023..42025538ERCC4 domain containing protein, expressed
LOC_Os01g71970OsAffx.27559.1.S1_x_at11/111+42038755..42040660GRAS family transcription factor containing protein, expressed
LOC_Os01g71970OsAffx.27559.2.S1_x_at1/111+42038755..42040660GRAS family transcription factor containing protein, expressed
LOC_Os01g71980OsAffx.24009.1.S1_at11/111+42042884..42045449Rho-GTPase-activating protein, putative, expressed
LOC_Os01g71980Os.6018.1.S1_at11/111+42042884..42045449Rho-GTPase-activating protein, putative, expressed
LOC_Os01g71990Os.49684.1.S1_x_at11/111+42045488..42048420Pyrroline-5-carboxylate reductase, putative, expressed
LOC_Os01g71990Os.49684.2.S1_at11/111+42045488..42048420Pyrroline-5-carboxylate reductase, putative, expressed
LOC_Os01g71990Os.49684.1.S1_at10/111+42045488..42048420Pyrroline-5-carboxylate reductase, putative, expressed
LOC_Os01g72000Os.7012.1.S1_at11/111+42049276..42053045Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os01g72020OsAffx.24010.1.S1_x_at11/111+42068335..42071388ankyrin repeat family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7012.1.S1_at--1136--5991Chr01:42049849..42049873 (25 bp)
GAGATCCTATCCTGAAACCAATGAT
LOC_Os01g72000
Os.7012.1.S1_at--1056--9011Chr01:42049757..42049781 (25 bp)
TGCAACTGTCCATGCTGAAACTAGC
LOC_Os01g72000
Os.7012.1.S1_at--336--8271Chr01:42049727..42049751 (25 bp)
GGCATGTGTAACTGGCCTTTTGCAA
LOC_Os01g72000
Os.7012.1.S1_at--713--8431Chr01:42049714..42049738 (25 bp)
GGCCTTTTGCAAGTTATGCTGCGCA
LOC_Os01g72000
Os.7012.1.S1_at--322--771Chr01:42049663..42049687 (25 bp)
ATGTCTGATCCAGGTTTGCCAGGCA
LOC_Os01g72000
Os.7012.1.S1_at--1143--5011Chr01:42049641..42049665 (25 bp)
GCAGTGATCTTCTCCACCAAATGTT
LOC_Os01g72000
Os.7012.1.S1_at--478--2551Chr01:42049589..42049613 (25 bp)
AACTGTGACATTGTACCTCCGGAAG
LOC_Os01g72000
Os.7012.1.S1_at--74--7691Chr01:42049551..42049575 (25 bp)
GGGTTACAGACTTCCAGTTGTGGCT
LOC_Os01g72000
Os.7012.1.S1_at--1070--4971Chr01:42049489..42049513 (25 bp)
GCATCGTGGACAGCAATCTTGTGTT
LOC_Os01g72000
Os.7012.1.S1_at--752--1211Chr01:42049399..42049423 (25 bp)
AGTTAGTCATGTGCCATTTCTTCTT
LOC_Os01g72000
Os.7012.1.S1_at--1033--6791Chr01:42049307..42049331 (25 bp)
GTTTTGTACAGCGAACTTGTTCAAC
LOC_Os01g72000
Target Sequence 
GAGATCCTATCCTGAAACCAATGATTGGAAAGATACTTGCTCACCTTGAGCTACTTCAAACACAATCGAGCTACTTTTAA
GCATGTTTGGGGTGCAACTGTCCATGCTGAAACTAGCAAAATGGCATGTGTAACTGGCCTTTTGCAAGTTATGCTGCGCA
ATGCATGTTGAGCATACGCTTGAATGATGTCTGATCCAGGTTTGCCAGGCAGTGATCTTCTCCACCAAATGTTACTGTGG
ACCAATTTGAAGAATGTTTCAACTGTGACATTGTACCTCCGGAAGAAGTGATTTTGTGGGGTTACAGACTTCCAGTTGTG
GCTGTACAAATAGCAATCTAGCAGAGCAAAGGGTGATTGTGCATCGTGGACAGCAATCTTGTGTTGGTCTGTCATTTTTG
TTAGTTCGTGGATTATATAGTGTTTAAAGGAGATAGATTGCAAGTTGTATAGTTAGTCATGTGCCATTTCTTCTTTTGTG
TATAAAATGGTGATATGAATCAAAAAGANAAAAAAAANNCAGTGATATATACTAGTACAATTGTTTTGTACAGCGAACTT
GTTCAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7012.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis