Browse Element(s) Details


OsAffx.24010.1.S1_x_at

Description tigr:9629.m07124
TID=OsAffx.24010.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=BTBPOZ domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7202011/11ankyrin repeat family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g71980OsAffx.24009.1.S1_at11/111+42042884..42045449Rho-GTPase-activating protein, putative, expressed
LOC_Os01g71980Os.6018.1.S1_at11/111+42042884..42045449Rho-GTPase-activating protein, putative, expressed
LOC_Os01g71990Os.49684.1.S1_x_at11/111+42045488..42048420Pyrroline-5-carboxylate reductase, putative, expressed
LOC_Os01g71990Os.49684.2.S1_at11/111+42045488..42048420Pyrroline-5-carboxylate reductase, putative, expressed
LOC_Os01g71990Os.49684.1.S1_at10/111+42045488..42048420Pyrroline-5-carboxylate reductase, putative, expressed
LOC_Os01g72000Os.7012.1.S1_at11/111+42049276..42053045Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os01g72020OsAffx.24010.1.S1_x_at11/111+42068335..42071388ankyrin repeat family protein, putative, expressed
LOC_Os01g72030OsAffx.22759.1.S1_at6/111+42080210..42082513retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0008219biological_processcell death
GO:0009408biological_processresponse to heat
GO:0009617biological_processresponse to bacteria
GO:0009618biological_processresponse to pathogenic bacteria
GO:0009621biological_processresponse to pathogenic fungi
GO:0009625biological_processresponse to insect
GO:0009627biological_processsystemic acquired resistance
GO:0009862biological_processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0009954biological_processproximal/distal pattern formation
GO:0010022biological_processmeristem determinacy
GO:0010227biological_processfloral organ abscission
GO:0048439biological_processflower morphogenesis
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24010.1.S1_x_at--791--9331Chr01:42068903..42068927 (25 bp)
TCGCGCTGCACTACGCCGTCGAGAA
LOC_Os01g72020
OsAffx.24010.1.S1_x_at--356--1831Chr01:42068891..42068915 (25 bp)
ACGCCGTCGAGAACTGCAGCCGGGA
LOC_Os01g72020
OsAffx.24010.1.S1_x_at--509--8851Chr01:42068573..42068597 (25 bp)
TGATGTCCCGGGAGGACGCCCAGAC
LOC_Os01g72020
OsAffx.24010.1.S1_x_at--1027--3011Chr01:42068538..42068562 (25 bp)
AATGCGGCGCCCATCTACGGCGAGT
LOC_Os01g72020
OsAffx.24010.1.S1_x_at--481--7531Chr01:42068492..42068516 (25 bp)
GTGGCGTGTACAATGCCAGTGGCAC
LOC_Os01g72020
OsAffx.24010.1.S1_x_at--401--3031Chr01:42068481..42068505 (25 bp)
AATGCCAGTGGCACCAGCTCGAGCA
LOC_Os01g72020
OsAffx.24010.1.S1_x_at--1113--1711Chr01:42068469..42068493 (25 bp)
ACCAGCTCGAGCATGGTGAACCTGA
LOC_Os01g72020
OsAffx.24010.1.S1_x_at--504--3491Chr01:42068458..42068482 (25 bp)
CATGGTGAACCTGAGCTTGGACAAC
LOC_Os01g72020
OsAffx.24010.1.S1_x_at--987--1251Chr01:42068445..42068469 (25 bp)
AGCTTGGACAACAGGATGGTGTACC
LOC_Os01g72020
OsAffx.24010.1.S1_x_at--340--2111Chr01:42068435..42068459 (25 bp)
ACAGGATGGTGTACCTGAACCTGGG
LOC_Os01g72020
OsAffx.24010.1.S1_x_at--525--4151Chr01:42068404..42068428 (25 bp)
CGCGCAGTTCGGGAAGATGAACGAC
LOC_Os01g72020
Target Sequence 
TCGCGCTGCACTACGCCGTCGAGAACTGCAGCCGGGAGGTGGTCAAGGCGCTGCTGGAGCTCGGCGCCGCCGACGTCAAC
CACCCGGCGGGCCCCGCCGGGAAGACGCCGCTGCACGTCGCGGCGGAGATGGTGTGCCCGGACATGGTGGCCGTGCTGCT
CGACCACCACGCCGACCCCAACGTCCGCACCGTCGACGGCGTCACGCCGCTCGACATCCTCCGCACGCTCACCTCCGACT
TCCTCTTCAAGGGCGCCGTGCCCGGCCTGGCGCACATCGAGCCCAACAAGCTCCGCCTCTGCCTGGAGCTCGTGCAGTCG
GCGGCCATGGTGATGTCCCGGGAGGACGCCCAGACCGCCGCGGTCAATGCGGCGCCCATCTACGGCGAGTCCCCCGGCGG
CGGCGGCGGCGGTGGCGTGTACAATGCCAGTGGCACCAGCTCGAGCATGGTGAACCTGAGCTTGGACAACAGGATGGTGT
ACCTGAACCTGGGGATGGACGCGCAGTTCGGGAAGATGAACGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24010.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis