Browse Element(s) Details


Os.6018.1.S1_at

Description gb:AK102153.1
DB_XREF= gi:32987362
TID=Os.6018.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6018 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033086E01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033086E01, full insert sequence.
FL= gb:AK102153.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7198011/11Rho-GTPase-activating protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g71960Os.57379.1.S1_at11/111+42018023..42025538ERCC4 domain containing protein, expressed
LOC_Os01g71970OsAffx.27559.1.S1_x_at11/111+42038755..42040660GRAS family transcription factor containing protein, expressed
LOC_Os01g71970OsAffx.27559.2.S1_x_at1/111+42038755..42040660GRAS family transcription factor containing protein, expressed
LOC_Os01g71980OsAffx.24009.1.S1_at11/111+42042884..42045449Rho-GTPase-activating protein, putative, expressed
LOC_Os01g71980Os.6018.1.S1_at11/111+42042884..42045449Rho-GTPase-activating protein, putative, expressed
LOC_Os01g71990Os.49684.1.S1_x_at11/111+42045488..42048420Pyrroline-5-carboxylate reductase, putative, expressed
LOC_Os01g71990Os.49684.2.S1_at11/111+42045488..42048420Pyrroline-5-carboxylate reductase, putative, expressed
LOC_Os01g71990Os.49684.1.S1_at10/111+42045488..42048420Pyrroline-5-carboxylate reductase, putative, expressed
LOC_Os01g72000Os.7012.1.S1_at11/111+42049276..42053045Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os01g72020OsAffx.24010.1.S1_x_at11/111+42068335..42071388ankyrin repeat family protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6018.1.S1_at--682--351Chr01:42044977..42045001 (25 bp)
ATAAGATTCTTGAGCACCGACCACT
LOC_Os01g71980
Os.6018.1.S1_at--338--1791Chr01:42044992..42045016 (25 bp)
ACCGACCACTGACAGACTATGGCAT
LOC_Os01g71980
Os.6018.1.S1_at--705--1291Chr01:42045023..42045047 (25 bp)
AGATCCTCTGCATCTTGCTGATATG
LOC_Os01g71980
Os.6018.1.S1_at--668--6391Chr01:42045099..42045123 (25 bp)
GATCGATGGTATTCTCGCAATTACA
LOC_Os01g71980
Os.6018.1.S1_at--809--3791Chr01:42045152..42045176 (25 bp)
CTCGCAATTTGATAGCCGAAGCATT
LOC_Os01g71980
Os.6018.1.S1_at--232--8211Chr01:42045237..42045261 (25 bp)
GGAATTCATATAGGGCTGCTTCGGC
LOC_Os01g71980
Os.6018.1.S1_at--1060--4751Chr01:42045251..42045275 (25 bp)
GCTGCTTCGGCATCGTAGGGTATAT
LOC_Os01g71980
Os.6018.1.S1_at--394--2291Chr01:42045286..42045310 (25 bp)
AAAGGCATACATTTCAATTTCCCAA
LOC_Os01g71980
Os.6018.1.S1_at--378--3151Chr01:42045300..42045324 (25 bp)
CAATTTCCCAATTTAATCTCCGTCG
LOC_Os01g71980
Os.6018.1.S1_at--276--10211Chr01:42045311..42045335 (25 bp)
TTTAATCTCCGTCGAACACTATGCC
LOC_Os01g71980
Os.6018.1.S1_at--246--9151Chr01:42045332..42045356 (25 bp)
TGCCCAGTCGAACACTATGCCTAAT
LOC_Os01g71980
Target Sequence 
ATAAGATTCTTGAGCACCGACCACTGACAGACTATGGCATAGAACCAGATCCTCTGCATCTTGCTGATATGCCTGCTGTG
GGGTACTCGCTCGGAAGGTATGAAGACAAATGGTCTCCTGAAGATCGATGGTATTCTCGCAATTACATGTGAGAATTTGA
TAGCTTGATGGTATNCTCGCAATTTGATAGCCGAAGCATTCAAGATTCATGTATATATAATAAAACTGTATGGTAATGTT
GTGTGATTGTCAGTTTGTTGGGAATTCATATAGGGCTGCTTCGGCATCGTAGGGTATATATTGCATGCAAAAGGCATACA
TTTCAATTTCCCAATTTAATCTCCGTCGAACACTATGCCCAGTCGAACACTATGCCTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6018.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis