Browse Element(s) Details


OsAffx.27559.1.S1_x_at

Description tigr:9629.m07118
TID=OsAffx.27559.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=GRAS family transcription factor, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7197011/11GRAS family transcription factor containing protein, expressed
LOC_Os06g109007/11scarecrow 3 protein, putative
LOC_Os05g313801/11GRAS family transcription factor containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g71950OsAffx.23842.2.S1_x_at11/111+42015240..42017005hypothetical protein
LOC_Os01g71950Os.36178.2.S1_at5/111+42015240..42017005hypothetical protein
LOC_Os01g71950OsAffx.23842.3.S1_x_at4/111+42015240..42017005hypothetical protein
LOC_Os01g71960Os.57379.1.S1_at11/111+42018023..42025538ERCC4 domain containing protein, expressed
LOC_Os01g71970OsAffx.27559.1.S1_x_at11/111+42038755..42040660GRAS family transcription factor containing protein, expressed
LOC_Os01g71970OsAffx.27559.2.S1_x_at1/111+42038755..42040660GRAS family transcription factor containing protein, expressed
LOC_Os01g71980OsAffx.24009.1.S1_at11/111+42042884..42045449Rho-GTPase-activating protein, putative, expressed
LOC_Os01g71980Os.6018.1.S1_at11/111+42042884..42045449Rho-GTPase-activating protein, putative, expressed
LOC_Os01g71990Os.49684.1.S1_x_at11/111+42045488..42048420Pyrroline-5-carboxylate reductase, putative, expressed
LOC_Os01g71990Os.49684.2.S1_at11/111+42045488..42048420Pyrroline-5-carboxylate reductase, putative, expressed
LOC_Os01g71990Os.49684.1.S1_at10/111+42045488..42048420Pyrroline-5-carboxylate reductase, putative, expressed
LOC_Os01g72000Os.7012.1.S1_at11/111+42049276..42053045Armadillo/beta-catenin-like repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008356biological_processasymmetric cell division
GO:0009630biological_processgravitropism
GO:0009640biological_processphotomorphogenesis
GO:0009739biological_processresponse to gibberellic acid stimulus
GO:0009740biological_processgibberellic acid mediated signaling
GO:0009938biological_processnegative regulation of gibberellic acid mediated signaling
GO:0010187biological_processnegative regulation of seed germination
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0003700molecular_functiontranscription factor activity
GO:0004871molecular_functionsignal transducer activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27559.1.S1_x_at--253--1532Chr01:42040248..42040272 (25 bp)
AGCAGGAGGCGAGCCACAACGCGGC
LOC_Os01g71970
OsAffx.27559.1.S1_x_at--657--1311Chr01:42040284..42040308 (25 bp)
AGAGGTTCGTGGAGGCGCTCAACTA
LOC_Os01g71970
OsAffx.27559.1.S1_x_at--106--2533Chr05:18154848..18154871 (24 bp)
AACTACTACGCGGCGCTGTTCGACT
LOC_Os05g31380
OsAffx.27559.1.S1_x_at--680--4571Chr01:42040316..42040340 (25 bp)
GCGCTGTTCGACTGCCTGGAGGTGG
LOC_Os01g71970
OsAffx.27559.1.S1_x_at--446--6172Chr06:5693252..5693276 (25 bp)
GAGGAGATCAAGAACATCGTGGCGT
LOC_Os06g10900
OsAffx.27559.1.S1_x_at--817--3232Chr06:5693260..5693401 (25 bp)
CAAGAACATCGTGGCGTGCGACGGC
LOC_Os06g10900
OsAffx.27559.1.S1_x_at--129--1092Chr06:5693316..5693406 (25 bp)
AGGGCCTCGGCTGCGACGGCTTCAA
LOC_Os06g10900
OsAffx.27559.1.S1_x_at--1027--5732Chr06:5693396..5693420 (25 bp)
GACGGCTTCAAGGTCCGGGAGGAGA
LOC_Os06g10900
OsAffx.27559.1.S1_x_at--615--972Chr06:5693415..5693439 (25 bp)
AGGAGAAGGGCAACTTCTTCCTCTG
LOC_Os06g10900
OsAffx.27559.1.S1_x_at--1096--2512Chr06:5693426..5693450 (25 bp)
AACTTCTTCCTCTGCTGGCAAGATC
LOC_Os06g10900
OsAffx.27559.1.S1_x_at--457--10552Chr06:5693429..5693453 (25 bp)
TTCTTCCTCTGCTGGCAAGATCGCG
LOC_Os06g10900
Target Sequence 
AGCAGGAGGCGAGCCACAACGCGGCGGGGCTGACGGAGAGGTTCGTGGAGGCGCTCAACTACTACGCGGCGCTGTTCGAC
TGCCTGGAGGTGGGGGCGGCGCGCGGGTCGGTGGAGCGCGCGCGCGTGGAGCGGTGGCTGCTCGGGGAGGAGATCAAGAA
CATCGTGGCGTGCGACGGCGGCGAGCGGCGGGAGCGGCACGAGCGGCTGGAGCGGTGGGCGCGGCGGCTGGAGGGCGCCG
GCTTCGGCCGCGTCCCGCTCAGCTACTACGCGCTGCTCCAGGCGCGGCGGGTGGCGCAGGGCCTCGGCTGCGACGGCTTC
AAGGTCCGGGAGGAGAAGGGCAACTTCTTCCTCTGCTGGCAAGATCGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27559.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis