Browse Element(s) Details


OsAffx.24009.1.S1_at

Description tigr:9629.m07119
TID=OsAffx.24009.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7198011/11Rho-GTPase-activating protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g71960Os.57379.1.S1_at11/111+42018023..42025538ERCC4 domain containing protein, expressed
LOC_Os01g71970OsAffx.27559.1.S1_x_at11/111+42038755..42040660GRAS family transcription factor containing protein, expressed
LOC_Os01g71970OsAffx.27559.2.S1_x_at1/111+42038755..42040660GRAS family transcription factor containing protein, expressed
LOC_Os01g71980OsAffx.24009.1.S1_at11/111+42042884..42045449Rho-GTPase-activating protein, putative, expressed
LOC_Os01g71980Os.6018.1.S1_at11/111+42042884..42045449Rho-GTPase-activating protein, putative, expressed
LOC_Os01g71990Os.49684.1.S1_x_at11/111+42045488..42048420Pyrroline-5-carboxylate reductase, putative, expressed
LOC_Os01g71990Os.49684.2.S1_at11/111+42045488..42048420Pyrroline-5-carboxylate reductase, putative, expressed
LOC_Os01g71990Os.49684.1.S1_at10/111+42045488..42048420Pyrroline-5-carboxylate reductase, putative, expressed
LOC_Os01g72000Os.7012.1.S1_at11/111+42049276..42053045Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os01g72020OsAffx.24010.1.S1_x_at11/111+42068335..42071388ankyrin repeat family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24009.1.S1_at--413--8031Chr01:42044092..42044116 (25 bp)
GGAGGGTCAGTATTGTCTCTAATAT
LOC_Os01g71980
OsAffx.24009.1.S1_at--387--10211Chr01:42044114..42044138 (25 bp)
TATTTTCTGTTTTGCTGTTTCCCTA
LOC_Os01g71980
OsAffx.24009.1.S1_at--788--8771Chr01:42044129..42044153 (25 bp)
TGTTTCCCTATCTTATTCAGCAGAA
LOC_Os01g71980
OsAffx.24009.1.S1_at--796--9811Chr01:42044165..42044189 (25 bp)
TAAACTCCACCATATTGTTGCACCT
LOC_Os01g71980
OsAffx.24009.1.S1_at--880--391Chr01:42044250..42044274 (25 bp)
ATCAGCGTGCTTTCTTTTATCTGCA
LOC_Os01g71980
OsAffx.24009.1.S1_at--423--10431Chr01:42044266..42044290 (25 bp)
TTATCTGCAGTCTCTGGTACTGACA
LOC_Os01g71980
OsAffx.24009.1.S1_at--891--1191Chr01:42044307..42044331 (25 bp)
AGTTGAAACCTAAAATATGCCGCTA
LOC_Os01g71980
OsAffx.24009.1.S1_at--87--611Chr01:42044323..42044347 (25 bp)
ATGCCGCTAGCAATGGACACCAGAA
LOC_Os01g71980
OsAffx.24009.1.S1_at--999--5631Chr01:42044359..42044383 (25 bp)
GACAGCAAGGGTTTTAGCTCTACCA
LOC_Os01g71980
OsAffx.24009.1.S1_at--900--5431Chr01:42044384..42044408 (25 bp)
GAACCTGCCTTACTGCAATTTGATG
LOC_Os01g71980
OsAffx.24009.1.S1_at--927--6771Chr01:42044455..42044479 (25 bp)
GTTACCCATACATTACTCTAGCAAA
LOC_Os01g71980
Target Sequence 
GGAGGGTCAGTATTGTCTCTAATATTTTCTGTTTTGCTGTTTCCCTATCTTATTCAGCAGAAAAATTAATGATTAAACTC
CACCATATTGTTGCACCTCATAGACTAGGTATTGTAGTGGTAAGTAGACCTGTTTTAAATCGATAGGCAGGCTAGTAAAT
CAGCGTGCTTTCTTTTATCTGCAGTCTCTGGTACTGACATTTTGGTATTGATATTAGTTGAAACCTAAAATATGCCGCTA
GCAATGGACACCAGAAGTTTTTTTTCTGACAGCAAGGGTTTTAGCTCTACCAGAACCTGCCTTACTGCAATTTGATGCAC
AAGTAATCTCATAACCATGCAAAACCTACTCAAAGTCTCAAATGTTACCCATACATTACTCTAGCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24009.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis