Browse Element(s) Details


Os.49684.1.S1_x_at

Description gb:AK067368.1
DB_XREF= gi:32977386
TID=Os.49684.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49684 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023044E03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013104L18, full insert sequence.
FL= gb:AK067368.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7199011/11Pyrroline-5-carboxylate reductase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g71960Os.57379.1.S1_at11/111+42018023..42025538ERCC4 domain containing protein, expressed
LOC_Os01g71970OsAffx.27559.1.S1_x_at11/111+42038755..42040660GRAS family transcription factor containing protein, expressed
LOC_Os01g71970OsAffx.27559.2.S1_x_at1/111+42038755..42040660GRAS family transcription factor containing protein, expressed
LOC_Os01g71980OsAffx.24009.1.S1_at11/111+42042884..42045449Rho-GTPase-activating protein, putative, expressed
LOC_Os01g71980Os.6018.1.S1_at11/111+42042884..42045449Rho-GTPase-activating protein, putative, expressed
LOC_Os01g71990Os.49684.1.S1_x_at11/111+42045488..42048420Pyrroline-5-carboxylate reductase, putative, expressed
LOC_Os01g71990Os.49684.2.S1_at11/111+42045488..42048420Pyrroline-5-carboxylate reductase, putative, expressed
LOC_Os01g71990Os.49684.1.S1_at10/111+42045488..42048420Pyrroline-5-carboxylate reductase, putative, expressed
LOC_Os01g72000Os.7012.1.S1_at11/111+42049276..42053045Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os01g72020OsAffx.24010.1.S1_x_at11/111+42068335..42071388ankyrin repeat family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006561biological_processproline biosynthesis
GO:0009408biological_processresponse to heat
GO:0009651biological_processresponse to salt stress
GO:0005737cellular_componentcytoplasm
GO:0004735molecular_functionpyrroline-5-carboxylate reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49684.1.S1_x_at--732--10072Chr09:11974618..11974842 (25 bp)
TAGTGGCCCGGCTTATATTTTCTTA
NONE
Os.49684.1.S1_x_at--983--8991Chr01:42045822..42045846 (25 bp)
TGAAGGATATGGTCACTTCCCCGGC
LOC_Os01g71990
Os.49684.1.S1_x_at--944--7771Chr01:42045760..42045784 (25 bp)
GGTGCATTCCGTGGGACGCTGATAA
LOC_Os01g71990
Os.49684.1.S1_x_at--629--6471Chr01:42045740..42045764 (25 bp)
GATAAATGCCGTTGTTGCTGCTACA
LOC_Os01g71990
Os.49684.1.S1_x_at--988--10711Chr01:42045726..42045750 (25 bp)
TTGCTGCTACAAAGCGTTGCCGTGA
LOC_Os01g71990
Os.49684.1.S1_x_at--357--6691Chr01:42045711..42045735 (25 bp)
GTTGCCGTGAACTTTCTCAGAGTTA
LOC_Os01g71990
Os.49684.1.S1_x_at--416--6071Chr01:42045692..42045716 (25 bp)
GAGTTAATCCTCTTGTTAGTTGTTA
LOC_Os01g71990
Os.49684.1.S1_x_at--1156--1131Chr01:42045668..42045692 (25 bp)
AGTCCATTGGATGTGCGACTCTGCG
LOC_Os01g71990
Os.49684.1.S1_x_at--49--3131Chr01:42045552..42045576 (25 bp)
AATTTGCTGCACTTTAGTGGCACGA
LOC_Os01g71990
Os.49684.1.S1_x_at--1072--6591Chr01:42045511..42045535 (25 bp)
GATTGATACTTATTCTGGCAGCAGC
LOC_Os01g71990
Os.49684.1.S1_x_at--52--8271Chr01:42045495..42045519 (25 bp)
GGCAGCAGCTGTTTTTGATCGTTTT
LOC_Os01g71990
Target Sequence 
TAGTGGCCCGGCTTATATTTTCTTAGCAATAGAGGCCNATGGCTGATGGTGGANGTTGCTGCTGGTCTTCCNCGGGANCT
TGCACNTGGTCTTGCATCTCAGACAGTNCTTGGTGCTGCAACCATGGTAAACAAGACTGGAAAACATCCGGGTCAGCTGA
AGGATATGGTCACTTCCCCGGCAGGAACCACCATAACTGGGATACAAGAGCTTGAGAAGGGTGCATTCCGTGGGACGCTG
ATAAATGCCGTTGTTGCTGCTACAAAGCGTTGCCGTGAACTTTCTCAGAGTTAATCCTCTTGTTAGTTGTTAGTCCATTG
GATGTGCGACTCTGCGCACGATTTCCCCTAGGGAAGAGGATGTGCGAATATTGATATTTAAACCTGATGAGGCTATCAGC
AAATTTTGCTTGTAGTTTTATCCGAATAATTTGCTGCACTTTAGTGGCACGAAATCTGGATGATGTTAGATTGATACTTA
TTCTGGCAGCAGCTGTTTTTGATCGTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49684.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis